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astrojuanlu / fenics-recipes

This repository contains conda recipes for the FEniCS libraries
The Unlicense
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boost mismatch: fenics-recipes requires 1.55, conda provides 1.57 #19

Closed mzaffalon closed 9 years ago

mzaffalon commented 9 years ago

conda install fenics --channel juanlu001 installs boost 1.57.0-1 from Anaconda but import dolfin complains about missing libboost_filesystem.so.1.55.0:

Python 2.7.10 |Continuum Analytics, Inc.| (default, May 28 2015, 17:02:03) 
[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
Anaconda is brought to you by Continuum Analytics.
Please check out: http://continuum.io/thanks and https://binstar.org
>>> import dolfin
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/michele/local/miniconda/lib/python2.7/site-packages/dolfin/__init__.py", line 16, in <module>
    from . import cpp
  File "/home/michele/local/miniconda/lib/python2.7/site-packages/dolfin/cpp/__init__.py", line 42, in <module>
    exec("from . import %s" % module_name)
  File "<string>", line 1, in <module>
  File "/home/michele/local/miniconda/lib/python2.7/site-packages/dolfin/cpp/common.py", line 32, in <module>
    _common = swig_import_helper()
  File "/home/michele/local/miniconda/lib/python2.7/site-packages/dolfin/cpp/common.py", line 28, in swig_import_helper
    _mod = imp.load_module('_common', fp, pathname, description)
ImportError: libboost_filesystem.so.1.55.0: cannot open shared object file: No such file or directory

I am on Debian testing, 64 bits. I am not sure if this is related to #6.

mzaffalon commented 9 years ago

I see it is: ContinuumIO/anaconda-issues#247.

mzaffalon commented 9 years ago

And conda search boost returns only version 1.57.0, so it is not even possible to force conda to install boost 1.55.

astrojuanlu commented 9 years ago

You are right @michele-zaffalon, I don't know how much time do the Anaconda guys need to solve it, but still the wrong specification is a problem on my side already reported in #6. Closing this as duplicate.

astrojuanlu commented 9 years ago

Well, Anaconda boost already has all the required libraries! :smile: Now there should be no further problems, but I will keep an eye on it just in case.

mzaffalon commented 9 years ago

Not sure if you uploaded the new version, but if I follow the instructions here http://fenicsproject.org/download/#installation-from-conda-packages, I get the same error message, missing boost 1.55 library.

astrojuanlu commented 9 years ago

conda search boost won't give 1.55, for that you also have to use my channel: conda search boost -c juanlu001

astrojuanlu commented 9 years ago

And nope, I didn't upload the new versions yet - I am in low connectivity until next week unfortunately :/

mzaffalon commented 9 years ago

No problem. libblas seems to be missing.

astrojuanlu commented 9 years ago

Is libblas missing? In theory it should be provided by mkl, did you install it? On Jul 10, 2015 5:55 PM, "michele" notifications@github.com wrote:

No problem. libblas seems to be missing.

— Reply to this email directly or view it on GitHub https://github.com/Juanlu001/fenics-recipes/issues/19#issuecomment-120443101 .

mzaffalon commented 9 years ago

That was missing.

On Fri, Jul 10, 2015 at 6:02 PM, Juan Luis Cano Rodríguez < notifications@github.com> wrote:

Is libblas missing? In theory it should be provided by mkl, did you install it? On Jul 10, 2015 5:55 PM, "michele" notifications@github.com wrote:

No problem. libblas seems to be missing.

— Reply to this email directly or view it on GitHub < https://github.com/Juanlu001/fenics-recipes/issues/19#issuecomment-120443101

.

— Reply to this email directly or view it on GitHub https://github.com/Juanlu001/fenics-recipes/issues/19#issuecomment-120444966 .