Remove temporary directory when all intermediate files are deleted

[camposandro]

If the user provides a temporary directory that was created outside of the output directory, and all intermediate parquet / resume log files have been deleted at the end of the pipeline, remove that same directory. Closes #298.

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[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 99.73%. Comparing base (d87041a) to head (42a9877). Report is 8 commits behind head on main.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #382 +/- ## ======================================= Coverage 99.73% 99.73% ======================================= Files 26 26 Lines 1496 1507 +11 ======================================= + Hits 1492 1503 +11 Misses 4 4 ```

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