jeffjennings
commented
5 days ago Hi Samuel, thank you for opening an issue. We're in the process of reworking the notebooks, and the error arises because there's no longer a requirements.txt file in the root of the repo (instead there are now individual requirements files in each folder in tutorials). So for the moment, I forked and made a branch that enables Binder to build successfully - the Binder link is here.
Let me know if you have any problems using that. It's not a long-term solution, but I've made a note to fix this properly and will update the binder link on the main repo when that's done.
skgrunblatt
Attempts to run tutorials on binder not working. Binder log reads as follows:
Waiting for build to start... Picked Git content provider. Cloning into '/tmp/repo2dockerysg478cb'... HEAD is now at 4c373d7 Merge pull request #606 from jeffjennings/requirements Building conda environment for python=3.9 Using CondaBuildPack builder Step 1/49 : FROM docker.io/library/buildpack-deps:jammy ---> e6c58935b80a Step 2/49 : ENV DEBIAN_FRONTEND=noninteractive ---> Using cache ---> b13f6f24df41 Step 3/49 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends locales > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/ ---> Using cache ---> a39861d97e74 Step 4/49 : RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && locale-gen ---> Using cache ---> afabfaf20da4 Step 5/49 : ENV LC_ALL=en_US.UTF-8 LANG=en_US.UTF-8 LANGUAGE=en_US.UTF-8 ---> Using cache ---> e1c773e777d1 Step 6/49 : ENV SHELL=/bin/bash ---> Using cache ---> 678c1454b3a1 Step 7/49 : ARG NB_USER ---> Using cache ---> 070487eb764b Step 8/49 : ARG NB_UID ---> Using cache ---> 221dc8d38012 Step 9/49 : ENV USER=${NB_USER} HOME=/home/${NB_USER} ---> Using cache ---> d5794176337d Step 10/49 : RUN groupadd --gid ${NB_UID} ${NB_USER} && useradd --comment "Default user" --create-home --gid ${NB_UID} --no-log-init --shell /bin/bash --uid ${NB_UID} ${NB_USER} ---> Using cache ---> e82998c22aef Step 11/49 : RUN apt-get -qq update && apt-get -qq install --yes --no-install-recommends gettext-base less unzip > /dev/null && apt-get -qq purge && apt-get -qq clean && rm -rf /var/lib/apt/lists/ ---> Using cache ---> ad3cea098780 Step 12/49 : EXPOSE 8888 ---> Using cache ---> 7c2e8db00ee5 Step 13/49 : ENV APP_BASE=/srv ---> Using cache ---> b2ff73a294a8 Step 14/49 : ENV CONDA_DIR=${APP_BASE}/conda ---> Using cache ---> 882b598b1179 Step 15/49 : ENV NB_PYTHON_PREFIX=${CONDA_DIR}/envs/notebook ---> Using cache ---> 26317ba458b6 Step 16/49 : ENV NPM_DIR=${APP_BASE}/npm ---> Using cache ---> 2cc5dc41ba26 Step 17/49 : ENV NPM_CONFIG_GLOBALCONFIG=${NPM_DIR}/npmrc ---> Using cache ---> 53fcc0106bf1 Step 18/49 : ENV NB_ENVIRONMENT_FILE=/tmp/env/environment.lock ---> Using cache ---> a11cf313c240 Step 19/49 : ENV MAMBA_ROOT_PREFIX=${CONDA_DIR} ---> Using cache ---> 95747ae864c0 Step 20/49 : ENV MAMBA_EXE=${CONDA_DIR}/bin/mamba ---> Using cache ---> b494459ca425 Step 21/49 : ENV CONDA_PLATFORM=linux-64 ---> Using cache ---> 0eb34c8bd954 Step 22/49 : ENV KERNEL_PYTHON_PREFIX=${NB_PYTHON_PREFIX} ---> Using cache ---> bba00eeb8872 Step 23/49 : ENV PATH=${NB_PYTHON_PREFIX}/bin:${CONDA_DIR}/bin:${NPM_DIR}/bin:${PATH} ---> Using cache ---> 4f50af22b168 Step 24/49 : COPY --chown=1000:1000 build_script_files/-2fopt-2fvenv-2flib-2fpython3-2e11-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2factivate-2dconda-2esh-e70a7b /etc/profile.d/activate-conda.sh ---> Using cache ---> 5a061bd47d23 Step 25/49 : COPY --chown=1000:1000 build_script_files/-2fopt-2fvenv-2flib-2fpython3-2e11-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2fenvironment-2epy-2d3-2e9-2dlinux-2d64-2elock-4a3b39 /tmp/env/environment.lock ---> Using cache ---> e4b404c9e27a Step 26/49 : COPY --chown=1000:1000 build_script_files/-2fopt-2fvenv-2flib-2fpython3-2e11-2fsite-2dpackages-2frepo2docker-2fbuildpacks-2fconda-2finstall-2dbase-2denv-2ebash-6a6072 /tmp/install-base-env.bash ---> Using cache ---> 6b40f7d0756f Step 27/49 : RUN TIMEFORMAT='time: %3R' bash -c 'time /tmp/install-base-env.bash' && rm -rf /tmp/install-base-env.bash /tmp/env ---> Using cache ---> d8ea84257351 Step 28/49 : RUN mkdir -p ${NPM_DIR} && chown -R ${NB_USER}:${NB_USER} ${NPM_DIR} ---> Using cache ---> 344beff86736 Step 29/49 : USER root ---> Using cache ---> 452771966f05 Step 30/49 : ARG REPO_DIR=${HOME} ---> Using cache ---> 8ed60776b028 Step 31/49 : ENV REPO_DIR=${REPO_DIR} ---> Using cache ---> 353870d83e78 Step 32/49 : RUN if [ ! -d "${REPO_DIR}" ]; then /usr/bin/install -o ${NB_USER} -g ${NB_USER} -d "${REPO_DIR}"; fi ---> Using cache ---> f80d063e2aa7 Step 33/49 : WORKDIR ${REPO_DIR} ---> Using cache ---> 528f281c6619 Step 34/49 : RUN chown ${NB_USER}:${NB_USER} ${REPO_DIR} ---> Using cache ---> cca6c3941ad3 Step 35/49 : ENV PATH=${HOME}/.local/bin:${REPO_DIR}/.local/bin:${PATH} ---> Using cache ---> 4f2b1b9391f4 Step 36/49 : ENV CONDA_DEFAULT_ENV=${KERNEL_PYTHON_PREFIX} ---> Using cache ---> d8a2efb9bbd4 Step 37/49 : USER root ---> Using cache ---> b48d3fe8df64 Step 38/49 : COPY --chown=1000:1000 src/ ${REPO_DIR}/ ---> 9e0a067bdb90 Step 39/49 : USER ${NB_USER} ---> Running in ecac437caa63 ---> Removed intermediate container ecac437caa63 ---> e1f986411914 Step 40/49 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} ' ---> Running in af434792c499 Channels:
==> WARNING: A newer version of conda exists. <== current version: 24.5.0 latest version: 24.9.2
Please update conda by running
Downloading and Extracting Packages: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Installing pip dependencies: ...working... Pip subprocess error: ERROR: Could not open requirements file: [Errno 2] No such file or directory: '/home/jovyan/requirements.txt'
Ran pip subprocess with arguments: ['/srv/conda/envs/notebook/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/jovyan/condaenv.61dlyz9g.requirements.txt', '--exists-action=b'] Pip subprocess output:
failed
CondaEnvException: Pip failed
time: 37.037 ---> Removed intermediate container af434792c499 The command '/bin/sh -c TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '' returned a non-zero code: 1