bsipocz
commented
3 years ago Traceback:
$ pytest astroquery/nasa_exoplanet_archive --remote-data
================================================= test session starts ==================================================
platform darwin -- Python 3.9.1, pytest-6.2.1, py-1.10.0, pluggy-0.13.1
Running tests with astroquery version 0.4.2_testrun.
Running tests in astroquery/nasa_exoplanet_archive.
Date: 2021-06-18T08:08:52
Platform: macOS-10.13.6-x86_64-i386-64bit
Executable: /usr/local/opt/python@3.9/bin/python3.9
Full Python Version:
3.9.1 (default, Jan 11 2021, 15:38:10)
[Clang 10.0.0 (clang-1000.11.45.5)]
encodings: sys: utf-8, locale: UTF-8, filesystem: utf-8
byteorder: little
float info: dig: 15, mant_dig: 15
Package versions:
Numpy: 1.20.2
Matplotlib: 3.3.3
Astropy: 4.2.1
APLpy: not available
pyregion: not available
regions: 0.4
pyVO: 1.1
mocpy: 0.8.5
astropy-healpix: 0.5
vamdclib: 0.1
astropy-helpers: 4.0.1
Using Astropy options: remote_data: any.
rootdir: /Users/bsipocz/munka/devel/astroquery, configfile: setup.cfg
plugins: requests-mock-1.9.2, arraydiff-0.3, doctestplus-0.8.0, remotedata-0.3.2, hypothesis-6.0.0, dependency-0.5.1, filter-subpackage-0.1.1, cov-2.10.1, openfiles-0.5.0, astropy-header-0.1.2
collected 50 items
astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive.py ..................................... [ 74%]
astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive_remote.py .......F..F.F [100%]
======================================================= FAILURES =======================================================
____________________________________________________ test_warnings _____________________________________________________
@pytest.mark.remote_data
def test_warnings():
with pytest.warns(NoResultsWarning):
NasaExoplanetArchive.query_criteria("ps", where="hostname='not a host'")
with pytest.warns(InputWarning):
> NasaExoplanetArchive.query_object("HAT-P-11 b", where="nothing")
astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive_remote.py:106:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
astroquery/utils/class_or_instance.py:25: in f
return self.fn(obj, *args, **kwds)
astroquery/utils/process_asyncs.py:29: in newmethod
result = self._parse_result(response, verbose=verbose)
astroquery/nasa_exoplanet_archive/core.py:566: in _parse_result
self._handle_error(text)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <astroquery.nasa_exoplanet_archive.core.NasaExoplanetArchiveClass object at 0x127887dc0>
text = 'ERROR<br>\nError Type: SystemError<br>\nMessage: Error 904: 42S22 :[Oracle][ODBC][Ora]ORA-00904: "PL_HOSTNAME": invalid identifier . FAIL\n'
def _handle_error(self, text):
"""
Parse the response from a request to see if it failed
Parameters
----------
text : str
The decoded body of the response.
Raises
------
InvalidColumnError :
If ``select`` included an invalid column.
InvalidTableError :
If the queried ``table`` does not exist.
RemoteServiceError :
If anything else went wrong.
"""
# Error messages will always be formatted starting with the word "ERROR"
if not text.startswith("ERROR"):
return
# Some errors have the form:
# Error type: ...
# Message: ...
# so we'll parse those to try to provide some reasonable feedback to the user
error_type = None
error_message = None
for line in text.replace("<br>", "").splitlines():
match = re.search(r"Error Type:\s(.+)$", line)
if match:
error_type = match.group(1).strip()
continue
match = re.search(r"Message:\s(.+)$", line)
if match:
error_message = match.group(1).strip()
continue
# If we hit this condition, that means that we weren't able to parse the error so we'll
# just throw the full response
if error_type is None or error_message is None:
raise RemoteServiceError(text)
# A useful special is if a column name is unrecognized. This has the format
# Error type: SystemError
# Message: ... "NAME_OF_COLUMN": invalid identifier ...
if error_type.startswith("SystemError"):
match = re.search(r'"(.*)": invalid identifier', error_message)
if match:
> raise InvalidQueryError(
(
"'{0}' is an invalid identifier. This error can be caused by invalid "
"column names, missing quotes, or other syntax errors"
).format(match.group(1).lower())
)
E astroquery.exceptions.InvalidQueryError: 'pl_hostname' is an invalid identifier. This error can be caused by invalid column names, missing quotes, or other syntax errors
astroquery/nasa_exoplanet_archive/core.py:448: InvalidQueryError
__________________________________________________ test_query_region ___________________________________________________
@pytest.mark.remote_data
def test_query_region():
coords = SkyCoord(ra=330.79488 * u.deg, dec=18.8843 * u.deg)
radius = 0.001
> table1 = NasaExoplanetArchive.query_region("pscomppars", coords, radius * u.deg)
astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive_remote.py:148:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
astroquery/utils/class_or_instance.py:25: in f
return self.fn(obj, *args, **kwds)
astroquery/utils/process_asyncs.py:29: in newmethod
result = self._parse_result(response, verbose=verbose)
astroquery/nasa_exoplanet_archive/core.py:566: in _parse_result
self._handle_error(text)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <astroquery.nasa_exoplanet_archive.core.NasaExoplanetArchiveClass object at 0x127887dc0>
text = 'ERROR<br>\nError Type: UserError - "table" parameter<br>\nMessage: "pscomppars" is not a valid table.\n'
def _handle_error(self, text):
"""
Parse the response from a request to see if it failed
Parameters
----------
text : str
The decoded body of the response.
Raises
------
InvalidColumnError :
If ``select`` included an invalid column.
InvalidTableError :
If the queried ``table`` does not exist.
RemoteServiceError :
If anything else went wrong.
"""
# Error messages will always be formatted starting with the word "ERROR"
if not text.startswith("ERROR"):
return
# Some errors have the form:
# Error type: ...
# Message: ...
# so we'll parse those to try to provide some reasonable feedback to the user
error_type = None
error_message = None
for line in text.replace("<br>", "").splitlines():
match = re.search(r"Error Type:\s(.+)$", line)
if match:
error_type = match.group(1).strip()
continue
match = re.search(r"Message:\s(.+)$", line)
if match:
error_message = match.group(1).strip()
continue
# If we hit this condition, that means that we weren't able to parse the error so we'll
# just throw the full response
if error_type is None or error_message is None:
raise RemoteServiceError(text)
# A useful special is if a column name is unrecognized. This has the format
# Error type: SystemError
# Message: ... "NAME_OF_COLUMN": invalid identifier ...
if error_type.startswith("SystemError"):
match = re.search(r'"(.*)": invalid identifier', error_message)
if match:
raise InvalidQueryError(
(
"'{0}' is an invalid identifier. This error can be caused by invalid "
"column names, missing quotes, or other syntax errors"
).format(match.group(1).lower())
)
elif error_type.startswith("UserError"):
# Another important one is when the table is not recognized. This has the format:
# Error type: UserError - "table" parameter
# Message: ... "NAME_OF_TABLE" is not a valid table.
match = re.search(r'"(.*)" is not a valid table', error_message)
if match:
> raise InvalidTableError("'{0}' is not a valid table".format(match.group(1).lower()))
E astroquery.nasa_exoplanet_archive.core.InvalidTableError: 'pscomppars' is not a valid table
astroquery/nasa_exoplanet_archive/core.py:461: InvalidTableError
_____________________________________________________ test_format ______________________________________________________
@pytest.mark.remote_data
def test_format():
> table1 = NasaExoplanetArchive.query_object("HAT-P-11 b")
astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive_remote.py:166:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
astroquery/utils/class_or_instance.py:25: in f
return self.fn(obj, *args, **kwds)
astroquery/utils/process_asyncs.py:29: in newmethod
result = self._parse_result(response, verbose=verbose)
astroquery/nasa_exoplanet_archive/core.py:566: in _parse_result
self._handle_error(text)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <astroquery.nasa_exoplanet_archive.core.NasaExoplanetArchiveClass object at 0x127887dc0>
text = 'ERROR<br>\nError Type: SystemError<br>\nMessage: Error 904: 42S22 :[Oracle][ODBC][Ora]ORA-00904: "PL_HOSTNAME": invalid identifier . FAIL\n'
def _handle_error(self, text):
"""
Parse the response from a request to see if it failed
Parameters
----------
text : str
The decoded body of the response.
Raises
------
InvalidColumnError :
If ``select`` included an invalid column.
InvalidTableError :
If the queried ``table`` does not exist.
RemoteServiceError :
If anything else went wrong.
"""
# Error messages will always be formatted starting with the word "ERROR"
if not text.startswith("ERROR"):
return
# Some errors have the form:
# Error type: ...
# Message: ...
# so we'll parse those to try to provide some reasonable feedback to the user
error_type = None
error_message = None
for line in text.replace("<br>", "").splitlines():
match = re.search(r"Error Type:\s(.+)$", line)
if match:
error_type = match.group(1).strip()
continue
match = re.search(r"Message:\s(.+)$", line)
if match:
error_message = match.group(1).strip()
continue
# If we hit this condition, that means that we weren't able to parse the error so we'll
# just throw the full response
if error_type is None or error_message is None:
raise RemoteServiceError(text)
# A useful special is if a column name is unrecognized. This has the format
# Error type: SystemError
# Message: ... "NAME_OF_COLUMN": invalid identifier ...
if error_type.startswith("SystemError"):
match = re.search(r'"(.*)": invalid identifier', error_message)
if match:
> raise InvalidQueryError(
(
"'{0}' is an invalid identifier. This error can be caused by invalid "
"column names, missing quotes, or other syntax errors"
).format(match.group(1).lower())
)
E astroquery.exceptions.InvalidQueryError: 'pl_hostname' is an invalid identifier. This error can be caused by invalid column names, missing quotes, or other syntax errors
astroquery/nasa_exoplanet_archive/core.py:448: InvalidQueryError
=============================================== short test summary info ================================================
FAILED astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive_remote.py::test_warnings - astroquery.exce...
FAILED astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive_remote.py::test_query_region - astroquery....
FAILED astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive_remote.py::test_format - astroquery.except...
============================================ 3 failed, 47 passed in 28.44s =============================================
Running remote and mock tests, respectively, for
astroquery.nasa_exoplanet_archivehas some tests failing depending on order in which the test files are run. Run separately they both pass. Run consecutively, like below, some tests in the last run file fail.Case 1:
Case 2: