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astrorama / SourceXtractorPlusPlus

SourceXtractor++, the next generation SExtractor
https://astrorama.github.io/SourceXtractorPlusPlus/
GNU Lesser General Public License v3.0
72 stars 9 forks source link

SX returns libgsl ImportError after installing with Conda #565

Closed extremelylongname closed 7 months ago

extremelylongname commented 7 months ago

After installing SX++ with conda into a new environment (version 0.19.2), the package fails to import in python with the following message:

---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
Cell In[2], line 1
----> 1 import sourcextractor

File ~/anaconda3/envs/sourcex2/lib/python3.10/site-packages/sourcextractor/__init__.py:18
      1 # -*- coding: utf-8 -*-
      2 
      3 # Copyright © 2019 Université de Genève, LMU Munich - Faculty of Physics, IAP-CNRS/Sorbonne Université
   (...)
     16 # along with this library; if not, write to the Free Software Foundation, Inc.,
     17 # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
---> 18 from _SourceXtractorPy import Flags

ImportError: libgsl.so.25: cannot open shared object file: No such file or directory

I've reinstalled/updated gsl, onnxruntime, re2, and onnxruntime-cpp, and the problem has still persisted.

extremelylongname commented 7 months ago

I fixed the issue by downgrading gsl from 2.7.1 to 2.7