some questions in the paper.

asylvz / SVarp

Phased structural variant discovery in pangenomes

MIT License

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some questions in the paper. #4

Open tanger-code opened 3 months ago

tanger-code commented 3 months ago

Hi, I'm looking at your paper, but there are some questions I don't understand.

In the step 5, Svtig2 is aligned to the s6 and s7 nodes, but why is SVtig2.1 >s6, SVtig 2.2 >s8 shown in Alignments？And why not use 'SVtig 2 >s6>s7' as the SVtig1 shown?

Can you help me explain it, thank you.

asylvz commented 3 months ago

Thanks @tanger-code , you are definitely right, I updated the figure but haven't uploaded the newer version to biorxiv. The aim of that figure is just to show that we realign the svtigs back to the graph and do filtering based on the mappings. Details are explained within the text.

Feel free to write if you have any further questions. Arda

tanger-code commented 3 months ago

OK, thanks for your quick reply.