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atc3 / maxquant_linux_guide

A guide to running MaxQuant in Linux
http://atchen.me/research/2019/03/21/mq-linux.html
MIT License
30 stars 11 forks source link

Unhandled Exception: System.Exception: Exception during execution of external process: 71235 #10

Open ningxiaolian opened 2 years ago

ningxiaolian commented 2 years ago

Hi, @atc3, I am a student at the University of Chinese Academy of Science. I encountered a problem when I run Maxquant on the Linux system, the error was listed bellow. My data is Lumos and I can successfully run untill the step "Label-free normalization". Then I found out the error from the "Label-free_normalization 11.error.txt" file. It seems the normalization didn't work. Could you give me some help or suggestions? I am looking forward to your reply!

Label-free_normalization 11.error.txt Unhandled Exception: System.Exception: Exception during execution of external process: 71235 at QueueingSystem.WorkDispatcher.ProcessSingleRunExternalProcess(Int32 taskIndex, Int32 threadIndex) at QueueingSystem.WorkDispatcher.DoWork(Int32 taskIndex, Int32 threadIndex) at QueueingSystem.WorkDispatcher.Work(Object threadIndex) at System.Threading.Thread.ThreadMain_ParameterizedThreadStart(Object parameter) at System.Threading.ExecutionContext.RunInternal(ExecutionContext executionContext, ContextCallback callback, Object state) --- End of stack trace from previous location where exception was thrown --- at System.Runtime.ExceptionServices.ExceptionDispatchInfo.Throw() /opt/gridengine/default/spool/cngb-compute-m13-35/job_scripts/5117348:

atc3 commented 2 years ago

Hi,

I unfortunately have not tested any of this on Lumos data. You may have better luck asking on the official MaxQuant Google group: https://groups.google.com/g/maxquant-list

ningxiaolian commented 2 years ago

Thank you so much for your reply! I will consult the offical MaxQuant group!

zhengjiebioinfo commented 1 year ago

Hi, @atc3, I am a student at the University of Chinese Academy of Science. I encountered a problem when I run Maxquant on the Linux system, the error was listed bellow. My data is Lumos and I can successfully run untill the step "Label-free normalization". Then I found out the error from the "Label-free_normalization 11.error.txt" file. It seems the normalization didn't work. Could you give me some help or suggestions? I am looking forward to your reply!

Label-free_normalization 11.error.txt Unhandled Exception: System.Exception: Exception during execution of external process: 71235 at QueueingSystem.WorkDispatcher.ProcessSingleRunExternalProcess(Int32 taskIndex, Int32 threadIndex) at QueueingSystem.WorkDispatcher.DoWork(Int32 taskIndex, Int32 threadIndex) at QueueingSystem.WorkDispatcher.Work(Object threadIndex) at System.Threading.Thread.ThreadMain_ParameterizedThreadStart(Object parameter) at System.Threading.ExecutionContext.RunInternal(ExecutionContext executionContext, ContextCallback callback, Object state) --- End of stack trace from previous location where exception was thrown --- at System.Runtime.ExceptionServices.ExceptionDispatchInfo.Throw() /opt/gridengine/default/spool/cngb-compute-m13-35/job_scripts/5117348:

Hello, I have also encountered the same problem. If you have solved this, could you please give me some suggestions or solutions?