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atc3 / maxquant_linux_guide

A guide to running MaxQuant in Linux
http://atchen.me/research/2019/03/21/mq-linux.html
MIT License
30 stars 11 forks source link

Exception during execution of external process: 4130467 #12

Closed VioletZZH closed 7 months ago

VioletZZH commented 7 months ago

Hello, dear Sir, I have the following problem when I use MaxDIA in MaxQuant, may I ask how I can solve it? I am looking forward to your reply

Configuring

Unhandled Exception: System.Exception: Exception during execution of external process: 4130467 Unhandled Exception: System.Exception: Given path for proc folder does not exist. Path=home/protein/combined/proc at BaseLibS.Util.Responder.GetStatusFile (System.String name, System.String infoFolder) [0x00030] in :0 at Utils.Util.MqProcessInfo.ErrorLog (System.String infoFolder, System.String title, System.String description, System.DateTime startTime, System.DateTime endTime, System.String error) [0x00011] in :0 at Utils.Util.ExternalProcess.Run (System.String[] args, System.Boolean debug) [0x00142] in :0 at MaxQuantTaskCore.Program.Main (System.String[] args) [0x00007] in <84143ecaa91a4c99adeae8279689607c>:0 [ERROR] FATAL UNHANDLED EXCEPTION: System.Exception: Given path for proc folder does not exist. Path=home/protein/combined/proc at BaseLibS.Util.Responder.GetStatusFile (System.String name, System.String infoFolder) [0x00030] in :0 at Utils.Util.MqProcessInfo.ErrorLog (System.String infoFolder, System.String title, System.String description, System.DateTime startTime, System.DateTime endTime, System.String error) [0x00011] in :0 at Utils.Util.ExternalProcess.Run (System.String[] args, System.Boolean debug) [0x00142] in :0 at MaxQuantTaskCore.Program.Main (System.String[] args) [0x00007] in <84143ecaa91a4c99adeae8279689607c>:0

at QueueingSystem.WorkDispatcher.ProcessSingleRunExternalProcess (System.Int32 taskIndex, System.Int32 threadIndex) [0x0009d] in :0 at QueueingSystem.WorkDispatcher.DoWork (System.Int32 taskIndex, System.Int32 threadIndex) [0x0001e] in :0 at QueueingSystem.WorkDispatcher.Work (System.Object threadIndex) [0x00054] in :0 at System.Threading.ThreadHelper.ThreadStart_Context (System.Object state) [0x00025] in <7cd4deb8302a478d9d393f24754841da>:0 at System.Threading.ExecutionContext.RunInternal (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state, System.Boolean preserveSyncCtx) [0x00071] in <7cd4deb8302a478d9d393f24754841da>:0 at System.Threading.ExecutionContext.Run (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state, System.Boolean preserveSyncCtx) [0x00000] in <7cd4deb8302a478d9d393f24754841da>:0 at System.Threading.ExecutionContext.Run (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state) [0x0002b] in <7cd4deb8302a478d9d393f24754841da>:0 at System.Threading.ThreadHelper.ThreadStart (System.Object obj) [0x0000f] in <7cd4deb8302a478d9d393f24754841da>:0 [ERROR] FATAL UNHANDLED EXCEPTION: System.Exception: Exception during execution of external process: 4130467 Unhandled Exception: System.Exception: Given path for proc folder does not exist. Path=home/protein/combined/proc at BaseLibS.Util.Responder.GetStatusFile (System.String name, System.String infoFolder) [0x00030] in :0 at Utils.Util.MqProcessInfo.ErrorLog (System.String infoFolder, System.String title, System.String description, System.DateTime startTime, System.DateTime endTime, System.String error) [0x00011] in :0 at Utils.Util.ExternalProcess.Run (System.String[] args, System.Boolean debug) [0x00142] in :0 at MaxQuantTaskCore.Program.Main (System.String[] args) [0x00007] in <84143ecaa91a4c99adeae8279689607c>:0 [ERROR] FATAL UNHANDLED EXCEPTION: System.Exception: Given path for proc folder does not exist. Path=home/protein/combined/proc at BaseLibS.Util.Responder.GetStatusFile (System.String name, System.String infoFolder) [0x00030] in :0 at Utils.Util.MqProcessInfo.ErrorLog (System.String infoFolder, System.String title, System.String description, System.DateTime startTime, System.DateTime endTime, System.String error) [0x00011] in :0 at Utils.Util.ExternalProcess.Run (System.String[] args, System.Boolean debug) [0x00142] in :0 at MaxQuantTaskCore.Program.Main (System.String[] args) [0x00007] in <84143ecaa91a4c99adeae8279689607c>:0

at QueueingSystem.WorkDispatcher.ProcessSingleRunExternalProcess (System.Int32 taskIndex, System.Int32 threadIndex) [0x0009d] in :0 at QueueingSystem.WorkDispatcher.DoWork (System.Int32 taskIndex, System.Int32 threadIndex) [0x0001e] in :0 at QueueingSystem.WorkDispatcher.Work (System.Object threadIndex) [0x00054] in :0 at System.Threading.ThreadHelper.ThreadStart_Context (System.Object state) [0x00025] in <7cd4deb8302a478d9d393f24754841da>:0 at System.Threading.ExecutionContext.RunInternal (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state, System.Boolean preserveSyncCtx) [0x00071] in <7cd4deb8302a478d9d393f24754841da>:0 at System.Threading.ExecutionContext.Run (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state, System.Boolean preserveSyncCtx) [0x00000] in <7cd4deb8302a478d9d393f24754841da>:0 at System.Threading.ExecutionContext.Run (System.Threading.ExecutionContext executionContext, System.Threading.ContextCallback callback, System.Object state) [0x0002b] in <7cd4deb8302a478d9d393f24754841da>:0 at System.Threading.ThreadHelper.ThreadStart (System.Object obj) [0x0000f] in <7cd4deb8302a478d9d393f24754841da>:0

atc3 commented 7 months ago

Hi,

If you read your error message you will see that it says:

System.Exception: Given path for proc folder does not exist. Path=home/protein/combined/proc

Fix the folder path and that will resolve this error at least

Albert

VioletZZH commented 7 months ago

Ok, Sir. I'll try to sort it out. Thank you very much