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atcg / clustOpt

Scripts for the optimization of RADseq clustering thresholds in population genetics
MIT License
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Using fixed relative path to resources/ directory #4

Closed mikerenfro closed 3 years ago

mikerenfro commented 3 years ago

https://github.com/atcg/clustOpt/blob/cbfef33c84575da2cddd26b083d8eefd440aa25e/vcfMissingness.pl#L57

https://github.com/atcg/clustOpt/blob/cbfef33c84575da2cddd26b083d8eefd440aa25e/vcfMissingness.pl#L66

Probably should include dirname($0) since the documentation indicates the script can be run from above the clustOpt directory as perl clustOpt/vcfMissingness.pl --vcflist <vcfListFile>.