atgenomix / JSON-schemas

JSON schemas for genomics and health data exchange and forms
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Create phenopacket schema json #8

Open YanJiunLiu opened 1 year ago

YanJiunLiu commented 1 year ago

`[Component]

1. Biosamaple 
    a. Phenotypic_Feature
        i. Evidence
            1) ExternalReference 
    b. Measurement 
        i. ComplexValue
            1) TypedQuantity
                a) Quantity  
        ii. Value
            1) Quantity
    c. Procedure 
    d. File
2. Disease 
3. Interpretation
    a. GenomicInterpretation 
        i. Variantinterpretation 
            1) VariationDescriptor
                a) Variation
        ii. GeneDescriptor
4. MetaData
    a. ExternalReference 
    b. upadates
5. Medical_action 
    a. Procedure 
    b. Treatment
    c. Radiation Therapy
    d. TherapeuticRegimen
6. Phenotypic_Feature
    i. Evidence
        1) ExternalReference 
7. Measurement 
    i. ComplexValue
        1) TypedQuantity
            a) Quantity  
    ii. Value
        1) Quantity
        2) OntologyClass
     8.File`
YanJiunLiu commented 1 year ago

Create biosample Component

  1. files
  2. Procedure
  3. Quantity
  4. Value
  5. TypedQuantity
  6. ComplexValue
  7. Measurement
  8. ExternalReference
  9. Evidence
  10. Phenotypic_Feature
YanJiunLiu commented 1 year ago

[2023/7/26 note] [優先完成的部分] (Biosample)

individual_id: String derived_from_id: String sample_type: OntologyClass time_of_collection: TimeElement description: String

YanJiunLiu commented 1 year ago

[2023/7/26 note] [優先完成的部分] (Measurement)

assay: OntologyClass

YanJiunLiu commented 1 year ago

[2023/7/26 note] [優先完成的部分] (Phenotypic_features)

description: String type: OntologyClass

YanJiunLiu commented 1 year ago

[2023/7/26 note] [優先完成的部分] (Meta_data)

priority: String created: google.protobuf.Timestamp created_by: String submitted_by: String updates: Update [0..*]