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athowes / multi-agyw

Spatio-temporal estimates of HIV risk group proportions for AGYW across 13 priority countries in sub-Saharan Africa
https://athowes.github.io/multi-agyw
MIT License
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Add more SSA countries outside priority 13 #133

Open athowes opened 2 years ago

athowes commented 2 years ago

Here are some starting steps you'd want to take:

  1. Add new countires to make/1_pull_areas.R, make/2_pull_naomi.R to get the area files and Naomi population, PLHIV, new infections data
  2. Make reports equivalent to src/ken_survey_behav for each of the new countries (note that survey_behav is currently processing the DHS plus adding in any other surveys like PHIA, so some of the survey_behav reports have other non-DHS things at the bottom)
  3. Add the data processing scripts to make/3_run_data_prep.R
  4. Modify the orderly.yml for aaa_fit_multi-sexbehav-sae to accept new area files and country indicator data, then try running multinomial model on the new country using option parameters = list(iso3 = "NEW")

I can write out more steps (jointly modelling the countries, post-processing, ...) but I think this should be a good start.