athowes / multi-agyw

Spatio-temporal estimates of HIV risk group proportions for AGYW across 13 priority countries in sub-Saharan Africa
https://athowes.github.io/multi-agyw
MIT License
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Joint fitting of all countries #40

Closed athowes closed 2 years ago

athowes commented 2 years ago

Marta mentioned that we could consider fitting all countries with a joint model. I can see that this would have some benefits, including: allowing inclusion of country-level random effects which may be used to control the degree of smoothing between countries (there is between country heterogeneity in the estimates, but not an unreasonable amount in my opinion), allowing for "percentage of variance explained by county-level random effects" to be read directly off the posterior. Downsides could be: takes longer to fit (computation so far is not a limiting factor), would require rewriting code, may be difficult not to over-smooth.

athowes commented 2 years ago
athowes commented 2 years ago

Closing issue #32 and having representing time properly in the model be part of the goal of this issue (where we have sufficiently many surveys to have a "true" temporal random effect, as well as possible survey-type random effects)

athowes commented 2 years ago

Add option to reduce number of countries to make this tractable locally for code checking.

athowes commented 2 years ago

Add interaction models to this.

athowes commented 2 years ago

This is done at a basic level so going to close and make new issues for extra improvements.