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atmire / Elsevier

Integration of DSpace 5 and 6 with Elsevier APIs
https://atmire.github.io/Elsevier
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Problems to integrate Elsevier API with DSpace v6.2 #1

Closed marcocastillo1971 closed 6 years ago

marcocastillo1971 commented 6 years ago

Hello, We are working on integrating DSpace 6.2 with the Elsevier API 6.x patch, but we have errors when applying the API patch.

Our environment was migrated from DSpace v5.6 to DSpace v6.2, then the patch of the Elsevier API was applied, but it delivers the following errors when the chek is applied and in the installation. An attempt was made to install the Elsevier API in the migrated environment and also in a fresh installation DSpace 6.2. • Which versions of DSpace are certified for the Elsevier API? • To perform the installation I must have a specific pre-requisite that is not included in the guide that appears in https://atmire.github.io/Elsevier?

[root@repositorio-desa dspace]# git apply --check /dspace/dspace62/source/dspace_6x...stable_6x.patch error: patch failed: dspace/config/spring/api/pubmed-integration.xml:9 error: dspace/config/spring/api/pubmed-integration.xml: patch does not apply error: patch failed: dspace/config/dspace.cfg:642 error: dspace/config/dspace.cfg: patch does not apply error: patch failed: dspace/config/item-submission.xml:199 error: dspace/config/item-submission.xml: patch does not apply error: patch failed: dspace/config/modules/publication-lookup.cfg:12 error: dspace/config/modules/publication-lookup.cfg: patch does not apply error: patch failed: dspace/config/registries/workflow-types.xml:20 error: dspace/config/registries/workflow-types.xml: patch does not apply error: patch failed: dspace/config/spring/api/core-factory-services.xml:42 error: dspace/config/spring/api/core-factory-services.xml: patch does not apply error: patch failed: dspace/config/spring/api/core-services.xml:50 error: dspace/config/spring/api/core-services.xml: patch does not apply error: patch failed: dspace/config/xmlui.xconf:81 error: dspace/config/xmlui.xconf: patch does not apply error: patch failed: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss:39 error: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:16 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:7 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:125 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java: patch does not apply error: patch failed: dspace/config/spring/api/scidir-service.xml:80 error: dspace/config/spring/api/scidir-service.xml: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java:11 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java: patch does not apply error: patch failed: dspace/config/dspace.cfg:787 error: dspace/config/dspace.cfg: patch does not apply error: patch failed: dspace/config/modules/elsevier-sciencedirect.cfg:7 error: dspace/config/modules/elsevier-sciencedirect.cfg: patch does not apply error: patch failed: dspace/config/spring/api/general-import-service.xml:18 error: dspace/config/spring/api/general-import-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/pubmed-service.xml:13 error: dspace/config/spring/api/pubmed-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/scidir-service.xml:14 error: dspace/config/spring/api/scidir-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/scopus-service.xml:21 error: dspace/config/spring/api/scopus-service.xml: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:18 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:15 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:1 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java: patch does not apply error: patch failed: dspace/config/dspace.cfg:787 error: dspace/config/dspace.cfg: patch does not apply error: patch failed: dspace/config/spring/api/general-import-service.xml:130 error: dspace/config/spring/api/general-import-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/scopus-service.xml:66 error: dspace/config/spring/api/scopus-service.xml: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java:123 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java: patch does not apply error: patch failed: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css:1596 error: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css: patch does not apply error: patch failed: dspace/config/spring/api/general-import-service.xml:331 error: dspace/config/spring/api/general-import-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/scidir-service.xml:80 error: dspace/config/spring/api/scidir-service.xml: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:229 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java: patch does not apply error: patch failed: dspace/config/modules/elsevier-sciencedirect.cfg:20 error: dspace/config/modules/elsevier-sciencedirect.cfg: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java:2 error: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java: patch does not apply error: patch failed: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl:135 error: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl: patch does not apply error: patch failed: dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java:332 error: dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java: patch does not apply error: patch failed: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl:55 error: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl: patch does not apply error: patch failed: dspace/config/spring/api/pubmed-service.xml:74 error: dspace/config/spring/api/pubmed-service.xml: patch does not apply error: patch failed: dspace/config/modules/elsevier-sciencedirect.cfg:27 error: dspace/config/modules/elsevier-sciencedirect.cfg: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java:6 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java: patch does not apply [root@repositorio-desa dspace]# [root@repositorio-desa dspace]# git apply --check /dspace/dspace62/source/dspace_6x...stable_6x.patch error: patch failed: dspace/config/spring/api/pubmed-integration.xml:9 error: dspace/config/spring/api/pubmed-integration.xml: patch does not apply error: patch failed: dspace/config/dspace.cfg:642 error: dspace/config/dspace.cfg: patch does not apply error: patch failed: dspace/config/item-submission.xml:199 error: dspace/config/item-submission.xml: patch does not apply error: patch failed: dspace/config/modules/publication-lookup.cfg:12 error: dspace/config/modules/publication-lookup.cfg: patch does not apply error: patch failed: dspace/config/registries/workflow-types.xml:20 error: dspace/config/registries/workflow-types.xml: patch does not apply error: patch failed: dspace/config/spring/api/core-factory-services.xml:42 error: dspace/config/spring/api/core-factory-services.xml: patch does not apply error: patch failed: dspace/config/spring/api/core-services.xml:50 error: dspace/config/spring/api/core-services.xml: patch does not apply error: patch failed: dspace/config/xmlui.xconf:81 error: dspace/config/xmlui.xconf: patch does not apply error: patch failed: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss:39 error: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:16 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:7 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:125 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java: patch does not apply error: patch failed: dspace/config/spring/api/scidir-service.xml:80 error: dspace/config/spring/api/scidir-service.xml: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java:11 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java: patch does not apply error: patch failed: dspace/config/dspace.cfg:787 error: dspace/config/dspace.cfg: patch does not apply error: patch failed: dspace/config/modules/elsevier-sciencedirect.cfg:7 error: dspace/config/modules/elsevier-sciencedirect.cfg: patch does not apply error: patch failed: dspace/config/spring/api/general-import-service.xml:18 error: dspace/config/spring/api/general-import-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/pubmed-service.xml:13 error: dspace/config/spring/api/pubmed-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/scidir-service.xml:14 error: dspace/config/spring/api/scidir-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/scopus-service.xml:21 error: dspace/config/spring/api/scopus-service.xml: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:18 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:15 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:1 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java: patch does not apply error: patch failed: dspace/config/dspace.cfg:787 error: dspace/config/dspace.cfg: patch does not apply error: patch failed: dspace/config/spring/api/general-import-service.xml:130 error: dspace/config/spring/api/general-import-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/scopus-service.xml:66 error: dspace/config/spring/api/scopus-service.xml: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java:123 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java: patch does not apply error: patch failed: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css:1596 error: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css: patch does not apply error: patch failed: dspace/config/spring/api/general-import-service.xml:331 error: dspace/config/spring/api/general-import-service.xml: patch does not apply error: patch failed: dspace/config/spring/api/scidir-service.xml:80 error: dspace/config/spring/api/scidir-service.xml: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:229 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java: patch does not apply error: patch failed: dspace/config/modules/elsevier-sciencedirect.cfg:20 error: dspace/config/modules/elsevier-sciencedirect.cfg: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java:2 error: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java: patch does not apply error: patch failed: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl:135 error: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl: patch does not apply error: patch failed: dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java:332 error: dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java: patch does not apply error: patch failed: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl:55 error: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl: patch does not apply error: patch failed: dspace/config/spring/api/pubmed-service.xml:74 error: dspace/config/spring/api/pubmed-service.xml: patch does not apply error: patch failed: dspace/config/modules/elsevier-sciencedirect.cfg:27 error: dspace/config/modules/elsevier-sciencedirect.cfg: patch does not apply error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java:6 error: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java: patch does not apply [root@repositorio-desa dspace]# git apply --whitespace=nowarn --reject /dspace/dspace62/source/dspace_6x...stable_6x.patch >> salida Checking patch dspace/config/dspace.cfg... Checking patch dspace/config/input-forms.xml... Checking patch dspace/config/item-submission.xml... Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/config/modules/publication-lookup.cfg... Checking patch dspace/config/registries/elsevier-types.xml... Checking patch dspace/config/registries/workflow-types.xml... Checking patch dspace/config/spring/api/core-factory-services.xml... Checking patch dspace/config/spring/api/core-services.xml... Checking patch dspace/config/spring/api/pubmed-integration.xml... Checking patch dspace/config/spring/api/scidir-service.xml... Checking patch dspace/config/spring/api/shared-metadata-config.xml... Checking patch dspace/config/spring/xmlui/decorator-services.xml... Checking patch dspace/config/xmlui.xconf... Checking patch dspace/modules/additions/src/main/java/org/dspace/authority/rest/RESTConnector.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/authorize/service/AuthorizeService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierFileAccessFromMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/FileAccessConsumer.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/FileAccessFromMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ItemMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/factory/FileAccessServiceFactory.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/factory/FileAccessServiceFactoryImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/FileAccessFromMetadataService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/ItemMetadataService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/MetadatumDTO.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/GenerateQueryForItem.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirMetadataFieldMapping.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/ArticleAccess.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/CheckItem.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/OpenAccessArticleCheck.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/GeneralUtils.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/LiveImportUtils.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/helper/Stringifier.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/helper/ToStringStringifier.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/AbstractImportMetadataSourceService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/storage/rdbms/DatabaseRegistryUpdater.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/submit/step/ElsevierUploadStep.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/submit/step/LiveImportStep.java... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/images/greenArrowInBox.svg... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/package.json... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts.xml... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts/submission-lookup.js... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_external-import.scss... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_main.scss... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/templates/records.hbs... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-embed.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-lookup.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/elements.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/global-variables.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/page-structure.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/preprocess.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/preprocess/elsevier-import.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/theme.xsl... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/ScienceDirect/ElsevierEmbed.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/FlowItemUtils.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/Navigation.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/fileaccess/FileAccessUI.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportAction.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportResult.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportSelected.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/SessionRecord.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/AddBitstreamForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/EditBitstreamForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/EditBitstreamFormAddition.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/EditBitstreamFormAdditionsManager.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/FileAccesEditBitstreamForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/EditFileStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/ElsevierUploadStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/LiveImportStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/UploadStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/UploadWithEmbargoStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/cocoon/JSONImportSearcher.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/AbstractAdapter.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/ItemAdapter.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/AdapterDecoratorManager.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/AttributeDecorator.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/ElementDecorator.java... Checking patch dspace/modules/xmlui/src/main/resources/aspects/ScienceDirect/sitemap.xmap... Checking patch dspace/modules/xmlui/src/main/webapp/aspects/json-lookup.xmap... Checking patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml... Checking patch dspace/modules/xmlui/src/main/webapp/static/js/entitlement.js... Checking patch dspace/modules/xmlui/src/main/webapp/static/js/submission-lookup.js... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/Mirage.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/@mirelogo-small.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/Crystal_Clear_action_lock3_64px.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/apple-touch-icon.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/arrow_down_ffffff_16x16.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/arrow_up_ffffff_16x16.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-errortriangle.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-lightning.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-warntriangle.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-circleslash.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-flag.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-thumb1.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-thumb2.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/4-question.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/4-star.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/5-pinion.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/5-star.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-greencheck.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-star.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-thumb1.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-thumb2.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/bug.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/readme.txt... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/invisible.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/lock24.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/lookup-indicator.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/suggest-indicator.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/unlock24.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/button_minus.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/button_plus.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/cc-ship.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/check_606060_15x15.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_closed_222222.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_doc_222222.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_open_222222.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc-nd.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc-sa.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nd.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-sa.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-generic.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-mark.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-zero.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/dspace-logo-only.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/favicon.ico... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/gear_6D859C_25x25.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/gear_ffffff_25x25.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/information.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_0_aaaaaa_40x100.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_b6c8d9_40x100.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_fff2f2_40x100.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_ffffff_40x100.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_70_000000_40x100.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_75_1f3f5e_40x100.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_75_f0f2f5_40x100.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_glass_55_fbf9ee_1x400.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_glass_65_ffffff_1x400.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_2e83ff_256x240.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_444444_256x240.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_c22121_256x240.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_ffffff_256x240.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/mime.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/search_icon_ffffff_20x20.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/HTML5Doctor_CSS_Reset.LICENSE... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/authority-control.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/base.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/handheld.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/helper.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/jquery-ui-1.8.15.custom.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/media.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/print.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/reset.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/yui.LICENSE... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/DD_belatedPNG.LICENSE... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/DD_belatedPNG_0.0.8a.js... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/choice-support.js... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/jquery-ui-1.8.15.custom.min.js... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/jquery-ui.LICENSE... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/modernizr-1.7.min.js... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/modernizr.LICENSE... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/HTML5Boilerplate.LICENSE... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/administrative/administrative.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/collection-list.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/community-list.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-list.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/general/choice-authority-control.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/sciencedirect/elsevier-embed.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/attribute-handlers.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/elements.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/forms.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/global-variables.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/navigation.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/page-structure.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/utils.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/sitemap.xmap... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/templates/publication_records.hbs... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss... Checking patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml... Checking patch dspace/modules/xmlui/src/main/webapp/static/js/entitlement.js... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/app-pdf.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/greenArrowInBox.svg... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/config/input-forms.xml... Checking patch dspace/config/item-submission.xml... Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/config/spring/api/scidir-service.xml... Checking patch dspace/config/input-forms.xml... Checking patch dspace/config/item-submission.xml... Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/config/registries/elsevier-types.xml... Checking patch dspace/config/registries/workflow-types.xml... Checking patch dspace/config/spring/api/general-import-service.xml... Checking patch dspace/config/spring/api/pubmed-integration.xml => dspace/config/spring/api/pubmed-service.xml... error: while searching for: default-autowire-candidates="Service,DAO,javax.sql.DataSource">

<context:annotation-config/>
<!-- allows us to use spring annotations in beans -->

<bean id="importService" class="org.dspace.importer.external.service.ImportService" scope="singleton"
      lazy-init="false" autowire="byType" destroy-method="destroy">

</bean>

<bean id="PubmedImportService" class="org.dspace.importer.external.pubmed.service.PubmedImportMetadataSourceServiceImpl" scope="singleton">
    <constructor-arg ref="pubmedService"/>
    <constructor-arg ref="PubmedMetadataFieldMapping"/>
    <property name="baseAddress" value="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/"/>

</bean>
<bean id="PubmedMetadataFieldMapping"
      class="org.dspace.importer.external.pubmed.metadatamapping.PubmedFieldMapping">

error: patch failed: dspace/config/spring/api/pubmed-integration.xml:9 error: while searching for: 

    <entry key-ref="dc.description.abstract" value-ref="pubmedAbstractContrib"/>
    <entry key-ref="dc.identifier.other" value-ref="pubmedContrib"/>
    <entry key-ref="dc.contributor.author" value-ref="pubmedAuthorContrib"/>
    <entry key-ref="dc.date.issued" value-ref="pubmedDateContrib"/>
    <entry key-ref="dc.language.iso" value-ref="pubmedLanguageContrib"/>
    <entry key-ref="dc.subject" value-ref="pubmedKeywordContrib"/>

</util:map>

error: patch failed: dspace/config/spring/api/pubmed-integration.xml:40 error: while searching for:

</bean>
<bean id="pubmedContrib" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.identifier.other"/>
    <property name="query" value="descendant::MedlineCitation/PMID"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>
<bean id="pubmedTitleContrib" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.title"/>
    <property name="query" value="descendant::ArticleTitle"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>

<bean id="pubmedAbstractContrib" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.description.abstract"/>
    <property name="query" value="descendant::AbstractText"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>

<bean id="pubmedAuthorContrib" class="org.dspace.importer.external.metadatamapping.contributor.CombinedMetadatumContributor">

error: patch failed: dspace/config/spring/api/pubmed-integration.xml:67 error: while searching for:

<bean id="pubmedFirstNameContrib" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.contributor.author"/>
    <property name="query" value="descendant::Author/ForeName"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>

<bean id="pubmedKeywordContrib" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.subject"/>
    <property name="query" value="descendant::Keyword"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>
<bean id="pubmedYearContrib" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.date.issued"/>
    <property name="query" value="descendant::PubDate/Year"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>

<bean id="pubmedMonthContrib" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.date.issued"/>
    <property name="query" value="descendant::PubDate/Month"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>

<bean id="pubmedDayContrib" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.date.issued"/>
    <property name="query" value="descendant::PubDate/Day"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>

<bean id="pubmedLanguageContribField" class="org.dspace.importer.external.metadatamapping.contributor.SimpleXpathMetadatumContributor">
    <property name="field" ref="dc.language.iso"/>
    <property name="query" value="descendant::Language"/>
    <property name="prefixToNamespaceMapping" ref="prefixToNamespaceMapping"/>
</bean>

<util:map id="prefixToNamespaceMapping">
</util:map>

<bean class="java.lang.Integer" id="maxRetry">
    <constructor-arg value="2"/>

error: patch failed: dspace/config/spring/api/pubmed-integration.xml:97 Hunk #6 succeeded at 159 (offset 17 lines). Checking patch dspace/config/spring/api/scidir-service.xml... Checking patch dspace/config/spring/api/scopus-service.xml... Checking patch dspace/config/spring/xmlui/decorator-services.xml... Checking patch dspace/config/xmlui.xconf... Checking patch dspace/modules/additions/pom.xml... Checking patch dspace/modules/additions/src/main/java/org/dspace/content/Community.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ItemMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/ItemMetadataService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/datamodel/ImportRecord.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/CheckItem.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/LiveImportUtils.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/GenerateDOIQueryForItem_Scopus.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/GenerateQueryForItem_Scopus.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusMetadataFieldMapping.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/AbstractImportMetadataSourceService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/storage/rdbms/DatabaseRegistryUpdater.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/submit/step/LiveImportStep.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/submit/step/SourceChoiceStep.java... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts/submission-lookup.js... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/templates/records.hbs... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-embed.xsl... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/ScienceDirect/ElsevierEmbed.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportResult.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/EditBitstreamForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/EditFileStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/JSONLookupSearcher.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/LiveImportStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/SourceChoiceStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/cocoon/JSONImportSearcher.java... Checking patch dspace/modules/xmlui/src/main/resources/aspects/ScienceDirect/sitemap.xmap... Checking patch dspace/modules/xmlui/src/main/resources/aspects/Submission/submission.js... Checking patch dspace/modules/xmlui/src/main/webapp/aspects/json-lookup.xmap... Checking patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml... Checking patch dspace/modules/xmlui/src/main/webapp/static/js/entitlement.js... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/sciencedirect/elsevier-embed.xsl... Checking patch dspace/config/spring/api/scidir-service.xml... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportAction.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportResult.java... Checking patch dspace/modules/xmlui/src/main/resources/aspects/ScienceDirect/sitemap.xmap... Checking patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/ImportSourceForm.java... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportAction.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/ImportSourceForm.java... Checking patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml... Checking patch dspace/config/dspace.cfg... error: while searching for:

Add doi here if you are using org.dspace.identifier.DOIIdentifierProvider to generate DOIs.

Adding doi here makes DSpace send metadata updates to your doi registration agency.

Add rdf here, if you are using dspace-rdf to export your repository content as RDF.

event.dispatcher.default.consumers = versioning, discovery, eperson

The noindex dispatcher will not create search or browse indexes (useful for batch item imports)

event.dispatcher.noindex.class = org.dspace.event.BasicDispatcher

error: patch failed: dspace/config/dspace.cfg:642 error: while searching for:

event.consumer.test.class = org.dspace.event.TestConsumer

event.consumer.test.filters = All+All

consumer to maintain versions

event.consumer.versioning.class = org.dspace.versioning.VersioningConsumer event.consumer.versioning.filters = Item+Install

error: patch failed: dspace/config/dspace.cfg:670 error: while searching for: include = ${module_dir}/curate.cfg include = ${module_dir}/discovery.cfg include = ${module_dir}/elastic-search-statistics.cfg include = ${module_dir}/fetchccdata.cfg include = ${module_dir}/google-analytics.cfg include = ${module_dir}/healthcheck.cfg

error: patch failed: dspace/config/dspace.cfg:1999 Checking patch dspace/config/item-submission.xml... error: while searching for: -->

   <!-- Find publications based on ID/DOI/Title/Author to pre-fill the submission. XMLUI ONLY.
        For JSPUI version, see JSPUIStartSubmissionLookupStep under <step-definitions> above.
   <step>
       <heading>submit.progressbar.lookup</heading>
       <processing-class>org.dspace.submit.step.XMLUIStartSubmissionLookupStep</processing-class>
       <xmlui-binding>org.dspace.app.xmlui.aspect.submission.submit.StartSubmissionLookupStep</xmlui-binding>
       <workflow-editable>true</workflow-editable>
   </step>
    -->
  <!--Step 2 will be to Describe the item.-->
  <step>
    <heading>submit.progressbar.describe</heading>

error: patch failed: dspace/config/item-submission.xml:199 error: while searching for: -->

  <!--Step 4 will be to Upload the item -->
  <step>
    <heading>submit.progressbar.upload</heading>
    <processing-class>org.dspace.submit.step.UploadStep</processing-class>
    <jspui-binding>org.dspace.app.webui.submit.step.JSPUploadStep</jspui-binding>
    <xmlui-binding>org.dspace.app.xmlui.aspect.submission.submit.UploadStep</xmlui-binding>
    <workflow-editable>true</workflow-editable>
  </step>

   <!-- Step 4 Upload Item with Embargo Features

error: patch failed: dspace/config/item-submission.xml:227 error: while searching for: -->

  <!--Step 5 will be to Verify/Review everything -->
  <step>
    <heading>submit.progressbar.verify</heading>

error: patch failed: dspace/config/item-submission.xml:247 Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/config/modules/publication-lookup.cfg... error: while searching for:

publication-lookup.url = http://eutils.ncbi.nlm.nih.gov/entrez/eutils/

#

Default value is * (which uses all import services)

publication-lookup.url = *

error: patch failed: dspace/config/modules/publication-lookup.cfg:12 Checking patch dspace/config/registries/elsevier-types.xml... Checking patch dspace/config/registries/workflow-types.xml... error: while searching for:

Metadata field used for the score review

error: patch failed: dspace/config/registries/workflow-types.xml:20 Checking patch dspace/config/spring/api/core-factory-services.xml... error: while searching for:

<bean id="versionServiceFactory" class="org.dspace.versioning.factory.VersionServiceFactoryImpl"/>

<!--Basic workflow services, comment or remove when switching to the configurable workflow -->
<bean id="workflowServiceFactory" class="org.dspace.workflowbasic.factory.BasicWorkflowServiceFactoryImpl"/>
<!--Configurable workflow services, uncomment to enable-->

error: patch failed: dspace/config/spring/api/core-factory-services.xml:42 Checking patch dspace/config/spring/api/core-services.xml... error: while searching for:

<bean class="org.dspace.content.WorkspaceItemServiceImpl"/>

<bean class="org.dspace.content.authority.ChoiceAuthorityServiceImpl"/>
<bean class="org.dspace.content.authority.MetadataAuthorityServiceImpl" lazy-init="true"/>

error: patch failed: dspace/config/spring/api/core-services.xml:50 Checking patch dspace/config/spring/api/general-import-service.xml... Checking patch dspace/config/spring/api/pubmed-integration.xml => dspace/config/spring/api/pubmed-service.xml... Checking patch dspace/config/spring/api/scidir-service.xml... Checking patch dspace/config/spring/api/scopus-service.xml... Checking patch dspace/config/spring/api/shared-metadata-config.xml... Checking patch dspace/config/spring/xmlui/decorator-services.xml... Checking patch dspace/config/xmlui.xconf... error: while searching for:

    <aspect name="Submission and Workflow" path="resource://aspects/Submission/" />

    <!-- ========================
         Usage Statistics Engines
         ======================== -->

error: patch failed: dspace/config/xmlui.xconf:81 error: while searching for:

    <!-- Mirage theme, @mire contributed theme, default since DSpace 3.0 -->
    <theme name="Atmire Mirage Theme" regex=".*" path="Mirage/" />

    <!-- Reference theme, the default Manakin XMLUI layout up to DSpace 1.8 -->
    <!-- <theme name="Default Reference Theme" regex=".*" path="Reference/" /> -->

error: patch failed: dspace/config/xmlui.xconf:157 Checking patch dspace/modules/additions/pom.xml... Hunk #1 succeeded at 87 (offset 15 lines). Checking patch dspace/modules/additions/src/main/java/org/dspace/authority/rest/RESTConnector.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/authorize/service/AuthorizeService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/content/Community.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierFileAccessFromMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/FileAccessConsumer.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/FileAccessFromMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ItemMetadataServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/factory/FileAccessServiceFactory.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/factory/FileAccessServiceFactoryImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/FileAccessFromMetadataService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/ItemMetadataService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/datamodel/ImportRecord.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/MetadatumDTO.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/GenerateQueryForItem.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirMetadataFieldMapping.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/ArticleAccess.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/CheckItem.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/OpenAccessArticleCheck.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/GeneralUtils.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/LiveImportUtils.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/helper/Stringifier.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/helper/ToStringStringifier.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/GenerateDOIQueryForItem_Scopus.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/GenerateQueryForItem_Scopus.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusMetadataFieldMapping.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/AbstractImportMetadataSourceService.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/storage/rdbms/DatabaseRegistryUpdater.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/submit/step/ElsevierUploadStep.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/submit/step/LiveImportStep.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/submit/step/SourceChoiceStep.java... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/images/greenArrowInBox.svg... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/package.json... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts.xml... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts/submission-lookup.js... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss... error: while searching for: background-color: #E2E2E2; }

aspect_submission_StepTransformer_div_StartSubmissionLookupStep {

aspect_submission_StepTransformer_field_search {

width: 81%;

error: patch failed: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss:39 error: while searching for: overflow-y: auto; }

aspect_submission_StepTransformer_item_publication-title{

margin-bottom:5px;

} } error: patch failed: dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss:55 Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_external-import.scss... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_main.scss... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/templates/records.hbs... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-embed.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-lookup.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/elements.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/global-variables.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/page-structure.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/preprocess.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/preprocess/elsevier-import.xsl... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/theme.xsl... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/ScienceDirect/ElsevierEmbed.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/FlowItemUtils.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/Navigation.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/fileaccess/FileAccessUI.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/ImportSourceForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportAction.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportResult.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportSelected.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/SessionRecord.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/AddBitstreamForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/EditBitstreamForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/EditBitstreamFormAddition.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/EditBitstreamFormAdditionsManager.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/FileAccesEditBitstreamForm.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/EditFileStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/ElsevierUploadStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/JSONLookupSearcher.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/LiveImportStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/SourceChoiceStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/UploadStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/UploadWithEmbargoStep.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/cocoon/JSONImportSearcher.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/AbstractAdapter.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/ItemAdapter.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/AdapterDecoratorManager.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/AttributeDecorator.java... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/ElementDecorator.java... Checking patch dspace/modules/xmlui/src/main/resources/aspects/ScienceDirect/sitemap.xmap... Checking patch dspace/modules/xmlui/src/main/resources/aspects/Submission/submission.js... Checking patch dspace/modules/xmlui/src/main/webapp/aspects/json-lookup.xmap... Checking patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml... Checking patch dspace/modules/xmlui/src/main/webapp/static/js/entitlement.js... Checking patch dspace/modules/xmlui/src/main/webapp/static/js/submission-lookup.js... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/Mirage.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/@mirelogo-small.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/Crystal_Clear_action_lock3_64px.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/app-pdf.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/apple-touch-icon.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/arrow_down_ffffff_16x16.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/arrow_up_ffffff_16x16.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-errortriangle.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-lightning.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-warntriangle.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-circleslash.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-flag.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-thumb1.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-thumb2.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/4-question.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/4-star.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/5-pinion.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/5-star.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-greencheck.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-star.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-thumb1.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-thumb2.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/bug.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/readme.txt... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/invisible.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/lock24.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/lookup-indicator.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/suggest-indicator.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/unlock24.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/button_minus.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/button_plus.png... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/cc-ship.gif... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/check_606060_15x15.png... 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Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/community-list.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-list.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/general/choice-authority-control.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/sciencedirect/elsevier-embed.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/attribute-handlers.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/elements.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/forms.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/global-variables.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/navigation.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/page-structure.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/utils.xsl... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/sitemap.xmap... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/templates/publication_records.hbs... Checking patch dspace/modules/additions/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java... Checking patch dspace/config/spring/api/scidir-service.xml... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleSeparatedXpathMetadatumContributor.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java... error: while searching for: import javax.ws.rs.core.; import org.apache.axiom.om.; import org.apache.axiom.om.xpath.; import org.dspace.content.; import org.dspace.importer.external.datamodel.; import org.dspace.importer.external.exception.; import org.dspace.importer.external.metadatamapping.; import org.dspace.importer.external.metadatamapping.transform.; import org.dspace.importer.external.service.; import org.jaxen.;

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:16 error: while searching for: private WebTarget pubmedWebTarget; private String baseAddress;

private class GetNbRecords implements Callable<Integer> {

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:33 error: while searching for:

        String count = getSingleElementValue(responseString, "Count");

        return Integer.parseInt(count);
    }
}

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:61 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java... error: while searching for: */ package org.dspace.importer.external.scidir;

import java.io.; import java.util.; import java.util.Collection; import java.util.concurrent.; import javax.ws.rs.client.; import javax.ws.rs.core.; import org.apache.axiom.om.; import org.apache.axiom.om.xpath.; import org.apache.log4j.; import org.dspace.content.; import org.dspace.core.; import org.dspace.importer.external.datamodel.; import org.dspace.importer.external.exception.; import org.dspace.importer.external.metadatamapping.; import org.dspace.importer.external.metadatamapping.contributor.; import org.dspace.importer.external.metadatamapping.transform.; import org.dspace.importer.external.service.; import org.jaxen.*;

/**

  • Created by Philip Vissenaekens (philip at atmire dot com)

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:7 error: while searching for: try { return Integer.parseInt(count); } catch(NumberFormatException e) { log.error(e.getMessage(), e); return 0; } }

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:75 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java... error: while searching for: try { return Integer.parseInt(count); } catch (NumberFormatException e) { log.error(e.getMessage(), e); return 0; } }

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:125 Checking patch dspace/config/spring/api/scidir-service.xml... error: while searching for:

    <entry key-ref="elsevier.aggregationtype" value-ref="aggregationtypeContrib"/>
    <entry key-ref="dc.rights.license" value-ref="copyrightContrib"/>
</util:map>

<bean class="org.dspace.importer.external.scidir.GenerateQueryForItem" id="DOIBasedService">

error: patch failed: dspace/config/spring/api/scidir-service.xml:80 error: while searching for:

</bean>

error: patch failed: dspace/config/spring/api/scidir-service.xml:373 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleSeparatedXpathMetadatumContributor.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java... error: while searching for: import javax.annotation.; import org.apache.axiom.om.; import org.apache.axiom.om.xpath.; import org.dspace.importer.external.metadatamapping.; import org.jaxen.; import org.springframework.beans.factory.annotation.;

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java:11 error: while searching for: xpath.addNamespace(prefixToNamespaceMapping.get(ns),ns); } List nodes=xpath.selectNodes(t); for(Object el:nodes) if(el instanceof OMElement) values.add(metadataFieldMapping.toDCValue(field, ((OMElement) el).getText())); else if(el instanceof OMAttribute){ values.add(metadataFieldMapping.toDCValue(field, ((OMAttribute) el).getAttributeValue())); } else if(el instanceof String){ values.add(metadataFieldMapping.toDCValue(field, (String) el)); } else if(el instanceof OMText) values.add(metadataFieldMapping.toDCValue(field, ((OMText) el).getText())); else { System.err.println("node of type: "+el.getClass()); } return values; } catch (JaxenException e) { System.err.println(query);

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java:123 error: while searching for: }

}

}

error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java:143 Checking patch dspace/config/dspace.cfg... Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/config/registries/elsevier-types.xml... Checking patch dspace/config/spring/api/general-import-service.xml... Checking patch dspace/config/spring/api/pubmed-service.xml... Checking patch dspace/config/spring/api/scidir-service.xml... Checking patch dspace/config/spring/api/scopus-service.xml... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/ImportService.java... Checking patch dspace/config/dspace.cfg... Checking patch dspace/config/registries/elsevier-types.xml... Checking patch dspace/config/spring/api/general-import-service.xml... Checking patch dspace/config/spring/api/scopus-service.xml... Checking patch dspace/config/dspace.cfg... error: while searching for:

since that usually contains email addresses which ought to be kept

private and is mainly of interest to administrators:

metadata.hide.dc.description.provenance = true

Settings for Submission Process

error: patch failed: dspace/config/dspace.cfg:787 Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... error: while searching for: elsevier-sciencedirect.api.entitlement.url=http://api.elsevier.com/content/article/entitlement

The search interfaces associated with ScienceDirect

elsevier-sciencedirect.api.scidir.url=http://api.elsevier.com/content/search/scidir

Url to base later rest calls on, such as retrieval based on PII etc

elsevier-sciencedirect.ui.article.url=http://www.sciencedirect.com/science/article

Check statuses associated with the requested articles

error: patch failed: dspace/config/modules/elsevier-sciencedirect.cfg:7 Checking patch dspace/config/registries/elsevier-types.xml... Hunk #1 succeeded at 208 (offset 7 lines). Checking patch dspace/config/spring/api/general-import-service.xml... error: while searching for:

</util:map>

<bean class="java.lang.String" id="apiKey" autowire-candidate="true">
    <constructor-arg value="${elsevier.api.key}"/>

error: patch failed: dspace/config/spring/api/general-import-service.xml:18 error: while searching for:

</bean>

<bean id="elsevier.url.scidir" class="org.dspace.importer.external.metadatamapping.MetadataFieldConfig">
    <constructor-arg value="elsevier.url.scidir"/>
</bean>

error: patch failed: dspace/config/spring/api/general-import-service.xml:128 Checking patch dspace/config/spring/api/pubmed-service.xml... error: while searching for:

error: patch failed: dspace/config/spring/api/pubmed-service.xml:13 error: while searching for: these must be present. If multiple are present the result is undefined. error: patch failed: dspace/config/spring/api/pubmed-service.xml:142 Checking patch dspace/config/spring/api/scidir-service.xml... error: while searching for: error: patch failed: dspace/config/spring/api/scidir-service.xml:14 Checking patch dspace/config/spring/api/scopus-service.xml... error: while searching for: error: patch failed: dspace/config/spring/api/scopus-service.xml:21 error: while searching for: error: patch failed: dspace/config/spring/api/scopus-service.xml:68 error: while searching for: For autowiring the DOI based service. error: patch failed: dspace/config/spring/api/scopus-service.xml:99 error: while searching for: error: patch failed: dspace/config/spring/api/scopus-service.xml:119 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java... error: while searching for: import org.apache.axiom.om.xpath.*; import org.apache.log4j.*; import org.dspace.content.*; import org.dspace.importer.external.datamodel.*; import org.dspace.importer.external.exception.*; import org.dspace.importer.external.service.*; error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:18 error: while searching for: @Override public String getImportSource() { return baseAddress; } private class FindMatchingRecords implements Callable> { error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:203 error: while searching for: @Override public void init() throws Exception { Client client = ClientBuilder.newClient(); WebTarget webTarget = client.target(baseAddress); pubmedWebTarget = webTarget.queryParam("db", "pubmed"); // invocationBuilder = pubmedWebTarget.request(MediaType.TEXT_PLAIN_TYPE); } public String getBaseAddress() { return baseAddress; } public void setBaseAddress(String baseAddress) { this.baseAddress = baseAddress; } @Override public List splitToRecords(String recordsSrc) { OMXMLParserWrapper records = OMXMLBuilderFactory.createOMBuilder(new StringReader(recordsSrc)); error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:267 error: while searching for: } } } error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java:297 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java... error: while searching for: import org.apache.axiom.om.*; import org.apache.log4j.*; import org.dspace.content.*; import org.dspace.importer.external.datamodel.*; import org.dspace.importer.external.exception.*; import org.dspace.importer.external.service.*; error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:15 error: while searching for: private static Logger log = Logger.getLogger(ScidirImportSourceServiceImpl.class); public String getApiUrl() { return apiUrl; } public void setApiUrl(String apiUrl) { this.apiUrl = apiUrl; } private class GetNbRecords implements Callable { private GetNbRecords(String queryString) { error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:30 error: while searching for: @Override public String getImportSource() { return apiUrl; // return ConfigurationManager.getProperty("elsevier-sciencedirect","api.url"); } private class FindMatchingRecords implements Callable> { error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:187 error: while searching for: @Override public void init() throws Exception { String baseAddress = apiUrl; Client client = ClientBuilder.newClient(); WebTarget webTarget = client.target(baseAddress); scidirWebTarget = webTarget.queryParam("httpAccept", "application/xml"); scidirWebTarget = scidirWebTarget.queryParam("apiKey", getApiKey()); } } error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java:233 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java... error: while searching for: package org.dspace.importer.external.scopus; import org.apache.axiom.om.OMElement; import org.apache.axiom.om.OMXMLBuilderFactory; import org.apache.axiom.om.OMXMLParserWrapper; import org.apache.axiom.om.xpath.AXIOMXPath; import org.apache.cxf.jaxrs.client.JAXRSClientFactory; import org.apache.log4j.Logger; import org.dspace.content.Item; import org.dspace.importer.external.datamodel.ImportRecord; import org.dspace.importer.external.datamodel.Query; import org.dspace.importer.external.exception.MetadataSourceException; import org.dspace.importer.external.metadatamapping.MetadatumDTO; import org.dspace.importer.external.scopus.wadl.IndexScopusResource; import org.dspace.importer.external.service.AbstractImportMetadataSourceService; import org.springframework.beans.factory.annotation.Autowired; import javax.ws.rs.core.Response; import java.io.InputStream; import java.io.StringReader; import java.util.*; import java.util.concurrent.Callable; /** * @author lotte.hofstede at atmire.com error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:1 error: while searching for: private GenerateQueryForItem_Scopus generateQueryForItem = null; @Autowired(required = false) public void setView(String view) { this.view = view; } @Autowired(required = false) public void setBaseAddress(String baseAddress) { this.baseAddress = baseAddress; } @Autowired public void setGenerateQueryForItem(GenerateQueryForItem_Scopus generateQueryForItem) { this.generateQueryForItem = generateQueryForItem; error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:32 error: while searching for: @Override public String getImportSource() { return baseAddress; } @Override error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:79 error: while searching for: protected Response getSearchResponse(String query, String fields) { IndexScopusResource scopusResource = JAXRSClientFactory.create(baseAddress, IndexScopusResource.class); // http://api.elsevier.com/content/search/index:SCOPUS?query=DOI(10.1007/s10439-010-0201-5)&field=citedby-count&apiKey=7f8c024a802ae228658bb08c974dbefb return scopusResource.simple("application/xml", null, null, null, null, null, null, getApiKey(), null, null, query, view, fields, null, null, null, null, null, null, null, null); } protected Response getSearchResponse(String query, String fields, int start, int count) { IndexScopusResource scopusResource = JAXRSClientFactory.create(baseAddress, IndexScopusResource.class); // http://api.elsevier.com/content/search/index:SCOPUS?query=DOI(10.1007/s10439-010-0201-5)&field=citedby-count&apiKey=7f8c024a802ae228658bb08c974dbefb return scopusResource.simple("application/xml", null, null, null, null, null, null, getApiKey(), null, null, query, view, fields, null, Integer.toString(start), Integer.toString(count), null, null, null, null, null); } error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:269 error: while searching for: return records.getDocumentElement(); } } } error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java:288 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/ImportService.java... Checking patch dspace/config/dspace.cfg... error: while searching for: # since that usually contains email addresses which ought to be kept # private and is mainly of interest to administrators: metadata.hide.dc.description.provenance = true metadata.hide.elsevier.description.abstract = true ##### Settings for Submission Process ##### error: patch failed: dspace/config/dspace.cfg:787 Checking patch dspace/config/registries/elsevier-types.xml... Hunk #1 succeeded at 211 (offset 7 lines). Checking patch dspace/config/spring/api/general-import-service.xml... error: while searching for: error: patch failed: dspace/config/spring/api/general-import-service.xml:130 Checking patch dspace/config/spring/api/scopus-service.xml... error: while searching for: error: patch failed: dspace/config/spring/api/scopus-service.xml:66 error: while searching for: error: patch failed: dspace/config/spring/api/scopus-service.xml:98 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java... error: while searching for: Option piiOption = OptionBuilder.withArgName("assignpii").withDescription("Lookups uo the pii for items with a doi (but no pii) and add it to the metadata").create('a'); Option metadataOption = OptionBuilder.withArgName("metadata").withDescription("import the item metadata").create('m'); Option forceOption = OptionBuilder.withArgName("force").withDescription("force update changes from elsevier").create('f'); Option identifierOption = OptionBuilder.withArgName("i").hasArg().withDescription("specify a handle to update a single item").create('i'); options.addOption(testOption); options.addOption(permissionOption); error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java:123 Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css... Checking patch dspace/config/spring/api/general-import-service.xml... Checking patch dspace/config/spring/api/scidir-service.xml... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java... Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl... Checking patch dspace/config/spring/api/pubmed-service.xml... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/MergeMultipleValuesXpathMetadatumContributor.java... Checking patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css... error: while searching for: margin-right:5px; margin-left:5px; } error: patch failed: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css:1596 Checking patch dspace/config/spring/api/general-import-service.xml... error: while searching for: error: patch failed: dspace/config/spring/api/general-import-service.xml:331 error: while searching for: error: patch failed: dspace/config/spring/api/general-import-service.xml:364 Checking patch dspace/config/spring/api/scidir-service.xml... error: while searching for: Defines how an org.dspace.content.Item is mapped to a query in ISI. Please note that exactly one of these must be present. If multiple are present the result is undefined. error: patch failed: dspace/config/spring/api/scidir-service.xml:80 error: while searching for: piiMetadata = itemService.getMetadataByMetadataString(item, piiMdField); String pii = null; if(piiMetadata.size()>0) { pii = piiMetadata.get(0).getValue(); } error: patch failed: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java:33 error: while searching for: @Override public String getDOI(Item item) { String doiMdField = ConfigurationManager.getProperty("elsevier-sciencedirect.metadata.field.doi"); List doiMetadata = itemService.getMetadataByMetadataString(item, doiMdField); String doi = null; if(doiMetadata.size()>0) { doi = doiMetadata.get(0).getValue(); if(doi.startsWith("DOI:")){ doi = doi.substring(4); } } return doi; } @Override error: patch failed: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java:42 error: while searching for: List eidMetadata = itemService.getMetadataByMetadataString(item, doiMdField); String eid = null; if(eidMetadata.size()>0) { eid = eidMetadata.get(0).getValue(); } error: patch failed: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java:65 error: while searching for: List scopusMetadata = itemService.getMetadataByMetadataString(item, scopusMDField); String scopus_id = null; if(scopusMetadata.size()>0) { scopus_id = scopusMetadata.get(0).getValue(); if(StringUtils.startsWith(scopus_id, "SCOPUS_ID:")){ scopus_id= scopus_id.substring("SCOPUS_ID:".length()); } } error: patch failed: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java:79 error: while searching for: List pubmedMetadata = itemService.getMetadataByMetadataString(item, pubmedMDField); String pubmed_id = null; if(pubmedMetadata.size()>0) { pubmed_id = pubmedMetadata.get(0).getValue(); } error: patch failed: dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java:96 Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl... error: while searching for:
error: patch failed: dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl:765 Checking patch dspace/config/spring/api/pubmed-service.xml... error: while searching for: error: patch failed: dspace/config/spring/api/pubmed-service.xml:74 error: while searching for: error: patch failed: dspace/config/spring/api/pubmed-service.xml:126 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/MergeMultipleValuesXpathMetadatumContributor.java... Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... error: while searching for: # Whether or not to embed the display + its respective width and height elsevier-sciencedirect.embed.display=false elsevier-sciencedirect.embed.display.width=700 elsevier-sciencedirect.embed.display.height=500 # Define if the link to the embed display should be rendered above (top) or under (bottom) the file section on the item page. # Only supported by theme Mirage error: patch failed: dspace/config/modules/elsevier-sciencedirect.cfg:27 Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java... Checking patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java... error: while searching for: import javax.ws.rs.*; import javax.ws.rs.core.Response; @Path("index:scopus") public interface IndexScopusResource { @GET error: patch failed: dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java:6 Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/config/spring/api/scopus-service.xml... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts/submission-lookup.js... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/templates/records.hbs... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_dspace_variables.scss... Checking patch dspace/config/modules/elsevier-sciencedirect.cfg... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/bower.json... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss... Checking patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_dspace_variables.scss... Applied patch dspace/config/dspace.cfg cleanly. Applied patch dspace/config/input-forms.xml cleanly. Applied patch dspace/config/item-submission.xml cleanly. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applied patch dspace/config/modules/publication-lookup.cfg cleanly. Applied patch dspace/config/registries/elsevier-types.xml cleanly. Applied patch dspace/config/registries/workflow-types.xml cleanly. Applied patch dspace/config/spring/api/core-factory-services.xml cleanly. Applied patch dspace/config/spring/api/core-services.xml cleanly. Applied patch dspace/config/spring/api/pubmed-integration.xml cleanly. Applied patch dspace/config/spring/api/scidir-service.xml cleanly. Applied patch dspace/config/spring/api/shared-metadata-config.xml cleanly. Applied patch dspace/config/spring/xmlui/decorator-services.xml cleanly. Applied patch dspace/config/xmlui.xconf cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/authority/rest/RESTConnector.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/authorize/service/AuthorizeService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierFileAccessFromMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/FileAccessConsumer.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/FileAccessFromMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ItemMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/factory/FileAccessServiceFactory.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/factory/FileAccessServiceFactoryImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/FileAccessFromMetadataService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/ItemMetadataService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/MetadatumDTO.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/GenerateQueryForItem.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirMetadataFieldMapping.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/ArticleAccess.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/CheckItem.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/OpenAccessArticleCheck.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/GeneralUtils.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/LiveImportUtils.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/helper/Stringifier.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/helper/ToStringStringifier.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/AbstractImportMetadataSourceService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/storage/rdbms/DatabaseRegistryUpdater.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/submit/step/ElsevierUploadStep.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/submit/step/LiveImportStep.java cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/images/greenArrowInBox.svg cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/package.json cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts.xml cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts/submission-lookup.js cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_external-import.scss cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_main.scss cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/templates/records.hbs cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-embed.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-lookup.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/elements.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/global-variables.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/page-structure.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/preprocess.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/preprocess/elsevier-import.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/theme.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/ScienceDirect/ElsevierEmbed.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/FlowItemUtils.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/Navigation.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/fileaccess/FileAccessUI.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportAction.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportResult.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportSelected.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/SessionRecord.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/AddBitstreamForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/EditBitstreamForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/EditBitstreamFormAddition.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/EditBitstreamFormAdditionsManager.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/FileAccesEditBitstreamForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/EditFileStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/ElsevierUploadStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/LiveImportStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/UploadStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/UploadWithEmbargoStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/cocoon/JSONImportSearcher.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/AbstractAdapter.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/ItemAdapter.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/AdapterDecoratorManager.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/AttributeDecorator.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/ElementDecorator.java cleanly. Applied patch dspace/modules/xmlui/src/main/resources/aspects/ScienceDirect/sitemap.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/aspects/json-lookup.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/static/js/entitlement.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/static/js/submission-lookup.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/Mirage.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/@mirelogo-small.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/Crystal_Clear_action_lock3_64px.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/apple-touch-icon.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/arrow_down_ffffff_16x16.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/arrow_up_ffffff_16x16.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-errortriangle.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-lightning.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-warntriangle.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-circleslash.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-flag.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-thumb1.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-thumb2.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/4-question.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/4-star.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/5-pinion.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/5-star.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-greencheck.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-star.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-thumb1.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-thumb2.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/bug.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/readme.txt cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/invisible.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/lock24.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/lookup-indicator.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/suggest-indicator.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/unlock24.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/button_minus.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/button_plus.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/cc-ship.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/check_606060_15x15.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_closed_222222.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_doc_222222.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_open_222222.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc-nd.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc-sa.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nd.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-sa.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-generic.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-mark.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-zero.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/dspace-logo-only.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/favicon.ico cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/gear_6D859C_25x25.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/gear_ffffff_25x25.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/information.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_0_aaaaaa_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_b6c8d9_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_fff2f2_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_ffffff_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_70_000000_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_75_1f3f5e_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_75_f0f2f5_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_glass_55_fbf9ee_1x400.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_glass_65_ffffff_1x400.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_2e83ff_256x240.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_444444_256x240.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_c22121_256x240.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_ffffff_256x240.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/mime.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/search_icon_ffffff_20x20.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/HTML5Doctor_CSS_Reset.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/authority-control.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/base.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/handheld.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/helper.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/jquery-ui-1.8.15.custom.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/media.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/print.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/reset.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/yui.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/DD_belatedPNG.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/DD_belatedPNG_0.0.8a.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/choice-support.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/jquery-ui-1.8.15.custom.min.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/jquery-ui.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/modernizr-1.7.min.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/modernizr.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/HTML5Boilerplate.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/administrative/administrative.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/collection-list.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/community-list.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-list.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/general/choice-authority-control.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/sciencedirect/elsevier-embed.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/attribute-handlers.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/elements.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/forms.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/global-variables.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/navigation.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/page-structure.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/utils.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/sitemap.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/templates/publication_records.hbs cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/static/js/entitlement.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/app-pdf.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/greenArrowInBox.svg cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/config/input-forms.xml cleanly. Applied patch dspace/config/item-submission.xml cleanly. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applied patch dspace/config/spring/api/scidir-service.xml cleanly. Applied patch dspace/config/input-forms.xml cleanly. Applied patch dspace/config/item-submission.xml cleanly. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applied patch dspace/config/registries/elsevier-types.xml cleanly. Applied patch dspace/config/registries/workflow-types.xml cleanly. Applied patch dspace/config/spring/api/general-import-service.xml cleanly. Applying patch dspace/config/spring/api/pubmed-integration.xml => dspace/config/spring/api/pubmed-service.xml with 4 rejects... Hunk #1 applied cleanly. Rejected hunk #2. Rejected hunk #3. Rejected hunk #4. Rejected hunk #5. Hunk #6 applied cleanly. Applied patch dspace/config/spring/api/scidir-service.xml cleanly. Applied patch dspace/config/spring/api/scopus-service.xml cleanly. Applied patch dspace/config/spring/xmlui/decorator-services.xml cleanly. Applied patch dspace/config/xmlui.xconf cleanly. Applied patch dspace/modules/additions/pom.xml cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/content/Community.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ItemMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/ItemMetadataService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/datamodel/ImportRecord.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/CheckItem.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/LiveImportUtils.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/GenerateDOIQueryForItem_Scopus.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/GenerateQueryForItem_Scopus.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusMetadataFieldMapping.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/AbstractImportMetadataSourceService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/storage/rdbms/DatabaseRegistryUpdater.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/submit/step/LiveImportStep.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/submit/step/SourceChoiceStep.java cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts/submission-lookup.js cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/templates/records.hbs cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-embed.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/ScienceDirect/ElsevierEmbed.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportResult.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/EditBitstreamForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/EditFileStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/JSONLookupSearcher.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/LiveImportStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/SourceChoiceStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/cocoon/JSONImportSearcher.java cleanly. Applied patch dspace/modules/xmlui/src/main/resources/aspects/ScienceDirect/sitemap.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/resources/aspects/Submission/submission.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/aspects/json-lookup.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/static/js/entitlement.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/sciencedirect/elsevier-embed.xsl cleanly. Applied patch dspace/config/spring/api/scidir-service.xml cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportAction.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportResult.java cleanly. Applied patch dspace/modules/xmlui/src/main/resources/aspects/ScienceDirect/sitemap.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/ImportSourceForm.java cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportAction.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/ImportSourceForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml cleanly. Applying patch dspace/config/dspace.cfg with 3 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Applying patch dspace/config/item-submission.xml with 3 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applying patch dspace/config/modules/publication-lookup.cfg with 1 reject... Rejected hunk #1. Applied patch dspace/config/registries/elsevier-types.xml cleanly. Applying patch dspace/config/registries/workflow-types.xml with 1 reject... Rejected hunk #1. Applying patch dspace/config/spring/api/core-factory-services.xml with 1 reject... Rejected hunk #1. Applying patch dspace/config/spring/api/core-services.xml with 1 reject... Rejected hunk #1. Applied patch dspace/config/spring/api/general-import-service.xml cleanly. Applied patch dspace/config/spring/api/pubmed-integration.xml => dspace/config/spring/api/pubmed-service.xml cleanly. Applied patch dspace/config/spring/api/scidir-service.xml cleanly. Applied patch dspace/config/spring/api/scopus-service.xml cleanly. Applied patch dspace/config/spring/api/shared-metadata-config.xml cleanly. Applied patch dspace/config/spring/xmlui/decorator-services.xml cleanly. Applying patch dspace/config/xmlui.xconf with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applied patch dspace/modules/additions/pom.xml cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/authority/rest/RESTConnector.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/authorize/service/AuthorizeService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/content/Community.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierFileAccessFromMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/FileAccessConsumer.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/FileAccessFromMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ItemMetadataServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/factory/FileAccessServiceFactory.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/factory/FileAccessServiceFactoryImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/FileAccessFromMetadataService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/service/ItemMetadataService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/datamodel/ImportRecord.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/MetadatumDTO.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/GenerateQueryForItem.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirMetadataFieldMapping.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/ArticleAccess.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/CheckItem.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/entitlement/OpenAccessArticleCheck.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/GeneralUtils.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/LiveImportUtils.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/helper/Stringifier.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/util/helper/ToStringStringifier.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/GenerateDOIQueryForItem_Scopus.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/GenerateQueryForItem_Scopus.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusMetadataFieldMapping.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/AbstractImportMetadataSourceService.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/storage/rdbms/DatabaseRegistryUpdater.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/submit/step/ElsevierUploadStep.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/submit/step/LiveImportStep.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/submit/step/SourceChoiceStep.java cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/images/greenArrowInBox.svg cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/package.json cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts.xml cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts/submission-lookup.js cleanly. Applying patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_external-import.scss cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_main.scss cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/templates/records.hbs cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-embed.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/sciencedirect/elsevier-lookup.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/elements.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/global-variables.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/core/page-structure.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/preprocess.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/preprocess/elsevier-import.xsl cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/theme.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/ScienceDirect/ElsevierEmbed.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/FlowItemUtils.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/Navigation.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/fileaccess/FileAccessUI.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/ImportSourceForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportAction.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportResult.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/LiveImportSelected.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/importer/external/scidir/SessionRecord.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/AddBitstreamForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/item/EditBitstreamForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/EditBitstreamFormAddition.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/EditBitstreamFormAdditionsManager.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/administrative/plugins/FileAccesEditBitstreamForm.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/EditFileStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/ElsevierUploadStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/JSONLookupSearcher.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/LiveImportStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/SourceChoiceStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/UploadStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/submission/submit/UploadWithEmbargoStep.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/cocoon/JSONImportSearcher.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/AbstractAdapter.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/ItemAdapter.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/AdapterDecoratorManager.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/AttributeDecorator.java cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/objectmanager/plugins/adapter/decorators/ElementDecorator.java cleanly. Applied patch dspace/modules/xmlui/src/main/resources/aspects/ScienceDirect/sitemap.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/resources/aspects/Submission/submission.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/aspects/json-lookup.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/i18n/messages.xml cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/static/js/entitlement.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/static/js/submission-lookup.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/Mirage.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/@mirelogo-small.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/Crystal_Clear_action_lock3_64px.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/app-pdf.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/apple-touch-icon.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/arrow_down_ffffff_16x16.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/arrow_up_ffffff_16x16.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-errortriangle.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-lightning.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/2-warntriangle.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-circleslash.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-flag.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-thumb1.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/3-thumb2.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/4-question.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/4-star.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/5-pinion.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/5-star.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-greencheck.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-star.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-thumb1.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/6-thumb2.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/bug.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/confidence/readme.txt cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/invisible.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/lock24.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/lookup-indicator.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/suggest-indicator.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/authority_control/unlock24.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/button_minus.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/button_plus.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/cc-ship.gif cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/check_606060_15x15.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_closed_222222.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_doc_222222.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/controlledvocabulary/voc_open_222222.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc-nd.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc-sa.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nc.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-nd.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by-sa.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-by.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-generic.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-mark.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/creativecommons/cc-zero.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/dspace-logo-only.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/favicon.ico cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/gear_6D859C_25x25.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/gear_ffffff_25x25.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/greenArrowInBox.svg cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/information.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_0_aaaaaa_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_b6c8d9_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_fff2f2_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_100_ffffff_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_70_000000_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_75_1f3f5e_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_flat_75_f0f2f5_40x100.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_glass_55_fbf9ee_1x400.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-bg_glass_65_ffffff_1x400.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_2e83ff_256x240.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_444444_256x240.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_c22121_256x240.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/jquery_ui/ui-icons_ffffff_256x240.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/mime.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/images/search_icon_ffffff_20x20.png cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/HTML5Doctor_CSS_Reset.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/authority-control.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/base.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/handheld.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/helper.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/jquery-ui-1.8.15.custom.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/media.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/print.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/reset.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/yui.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/DD_belatedPNG.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/DD_belatedPNG_0.0.8a.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/choice-support.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/jquery-ui-1.8.15.custom.min.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/jquery-ui.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/modernizr-1.7.min.js cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/js/modernizr.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/HTML5Boilerplate.LICENSE cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/administrative/administrative.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/collection-list.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/community-list.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-list.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/general/choice-authority-control.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/sciencedirect/elsevier-embed.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/attribute-handlers.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/elements.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/forms.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/global-variables.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/navigation.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/page-structure.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/core/utils.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/sitemap.xmap cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/templates/publication_records.hbs cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/config/spring/api/scidir-service.xml cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleSeparatedXpathMetadatumContributor.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java cleanly. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java with 3 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java with 1 reject... Rejected hunk #1. Applying patch dspace/config/spring/api/scidir-service.xml with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleSeparatedXpathMetadatumContributor.java cleanly. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/SimpleXpathMetadatumContributor.java with 3 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Applied patch dspace/config/dspace.cfg cleanly. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applied patch dspace/config/registries/elsevier-types.xml cleanly. Applied patch dspace/config/spring/api/general-import-service.xml cleanly. Applied patch dspace/config/spring/api/pubmed-service.xml cleanly. Applied patch dspace/config/spring/api/scidir-service.xml cleanly. Applied patch dspace/config/spring/api/scopus-service.xml cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/ImportService.java cleanly. Applied patch dspace/config/dspace.cfg cleanly. Applied patch dspace/config/registries/elsevier-types.xml cleanly. Applied patch dspace/config/spring/api/general-import-service.xml cleanly. Applied patch dspace/config/spring/api/scopus-service.xml cleanly. Applying patch dspace/config/dspace.cfg with 1 reject... Rejected hunk #1. Applying patch dspace/config/modules/elsevier-sciencedirect.cfg with 1 reject... Rejected hunk #1. Applied patch dspace/config/registries/elsevier-types.xml cleanly. Applying patch dspace/config/spring/api/general-import-service.xml with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applying patch dspace/config/spring/api/pubmed-service.xml with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applying patch dspace/config/spring/api/scidir-service.xml with 1 reject... Rejected hunk #1. Applying patch dspace/config/spring/api/scopus-service.xml with 4 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Rejected hunk #4. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/pubmed/service/PubmedImportMetadataSourceServiceImpl.java with 4 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Rejected hunk #4. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java with 4 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Rejected hunk #4. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/ScopusImportMetadataSourceServiceImpl.java with 5 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Rejected hunk #4. Rejected hunk #5. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/service/ImportService.java cleanly. Applying patch dspace/config/dspace.cfg with 1 reject... Rejected hunk #1. Applied patch dspace/config/registries/elsevier-types.xml cleanly. Applying patch dspace/config/spring/api/general-import-service.xml with 1 reject... Rejected hunk #1. Applying patch dspace/config/spring/api/scopus-service.xml with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java cleanly. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/UpdateElsevierItems.java with 1 reject... Rejected hunk #1. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css cleanly. Applied patch dspace/config/spring/api/general-import-service.xml cleanly. Applied patch dspace/config/spring/api/scidir-service.xml cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java cleanly. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java cleanly. Applied patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl cleanly. Applied patch dspace/config/spring/api/pubmed-service.xml cleanly. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/MergeMultipleValuesXpathMetadatumContributor.java cleanly. Applying patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/css/style.css with 1 reject... Rejected hunk #1. Applying patch dspace/config/spring/api/general-import-service.xml with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applying patch dspace/config/spring/api/scidir-service.xml with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scidir/ScidirImportSourceServiceImpl.java with 1 reject... Rejected hunk #1. Applying patch dspace/config/modules/elsevier-sciencedirect.cfg with 1 reject... Rejected hunk #1. Applying patch dspace/modules/additions/src/main/java/org/dspace/fileaccess/ElsevierItemMetadataServiceImpl.java with 7 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Rejected hunk #4. Rejected hunk #5. Rejected hunk #6. Rejected hunk #7. Applying patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/xsl/custom/aspect/artifactbrowser/item-view.xsl with 4 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Rejected hunk #4. Applying patch dspace/modules/xmlui/src/main/java/org/dspace/app/xmlui/aspect/artifactbrowser/ItemViewer.java with 3 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Applying patch dspace/modules/xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl with 8 rejects... Rejected hunk #1. Rejected hunk #2. Rejected hunk #3. Rejected hunk #4. Rejected hunk #5. Rejected hunk #6. Rejected hunk #7. Rejected hunk #8. Applying patch dspace/config/spring/api/pubmed-service.xml with 2 rejects... Rejected hunk #1. Rejected hunk #2. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/metadatamapping/contributor/MergeMultipleValuesXpathMetadatumContributor.java cleanly. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applying patch dspace/config/modules/elsevier-sciencedirect.cfg with 1 reject... Rejected hunk #1. Applied patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java cleanly. Applying patch dspace/modules/additions/src/main/java/org/dspace/importer/external/scopus/wadl/IndexScopusResource.java with 1 reject... Rejected hunk #1. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applied patch dspace/config/spring/api/scopus-service.xml cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/scripts/submission-lookup.js cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/templates/records.hbs cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_dspace_variables.scss cleanly. Applied patch dspace/config/modules/elsevier-sciencedirect.cfg cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/bower.json cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/_style.scss cleanly. Applied patch dspace/modules/xmlui-mirage2/src/main/webapp/themes/Mirage2/styles/classic_mirage_color_scheme/_dspace_variables.scss cleanly.
bram-atmire commented 6 years ago

6.1, 6.2 and 6.3 compatibility were addressed in the Aug 1st release. I'm taking the liberty to close the issue but please feel free to reopen, or to start another issue if you're still seeing problems.

marcocastillo1971 commented 6 years ago

Hello, the integration with the API works correctly, I appreciate all your help and collaboration.

Best Regards,

Marco Castillo,

El jue., 2 ago. 2018 a las 4:20, Bram Luyten (notifications@github.com) escribió:

6.1, 6.2 and 6.3 compatibility were addressed in the Aug 1st release. I'm taking the liberty to close the issue but please feel free to reopen, or to start another issue if you're still seeing problems.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/atmire/Elsevier/issues/1#issuecomment-409846421, or mute the thread https://github.com/notifications/unsubscribe-auth/AlSYwcKA2OqFsXlSOniqv_MzrFHYmAulks5uMrZWgaJpZM4T4zrm .

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