Closed edzer closed 5 years ago
I'm planning a new units submission to CRAN in about a week; it will break EmissV as of now.
Could you please look into this:
edzer@gin-edzer:/tmp/rdeps$ cat rdepends_EmissV.Rcheck/00check.log * using log directory ‘/tmp/rdeps/EmissV.Rcheck’ * using R version 3.5.1 (2018-07-02) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘EmissV/DESCRIPTION’ ... OK * this is package ‘EmissV’ version ‘0.664.7’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘EmissV’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ERROR Running examples in ‘EmissV-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: emission > ### Title: Emissions in the format for atmospheric models > ### Aliases: emission > > ### ** Examples > > veiculos <- vehicles(example = TRUE) using a example of vehicles (DETRAN 2016 data and SP vahicle distribution): Category Type Fuel Use SP RJ Light Duty Vehicles Gasohol LDV_E25 LDV E25 41 [km/d] 11624342 2712343 Light Duty Vehicles Ethanol LDV_E100 LDV E100 41 [km/d] 874627 204079 Light Duty Vehicles Flex LDV_F LDV FLEX 41 [km/d] 9845022 2297169 Diesel Trucks TRUCKS_B5 TRUCKS B5 110 [km/d] 710634 165814 Diesel Urban Busses CBUS_B5 BUS B5 165 [km/d] 792630 184947 Diesel Intercity Busses MBUS_B5 BUS B5 165 [km/d] 21865 5101 Gasohol Motorcycles MOTO_E25 MOTO E25 140 [km/d] 3227921 753180 Flex Motorcycles MOTO_F MOTO FLEX 140 [km/d] 235056 54846 MG PR SC Light Duty Vehicles Gasohol 4371228 3036828 2029599 Light Duty Vehicles Ethanol 328895 228494 152709 Light Duty Vehicles Flex 3702131 2571986 1718932 Diesel Trucks 267227 185651 124076 Diesel Urban Busses 298061 207072 138392 Diesel Intercity Busses 8222 5712 3817 Gasohol Motorcycles 1213830 843285 563592 Flex Motorcycles 88390 61407 41040 > > EmissionFactors <- emissionFactor(example = TRUE) using a example emission factor (values calculated from CETESB 2015): CO PM Light Duty Vehicles Gasohol 1.75 [g/km] 0.0013 [g/km] Light Duty Vehicles Ethanol 10.04 [g/km] 0.0000 [g/km] Light Duty Vehicles Flex 0.39 [g/km] 0.0010 [g/km] Diesel Trucks 0.45 [g/km] 0.0612 [g/km] Diesel Urban Busses 0.77 [g/km] 0.1052 [g/km] Diesel Intercity Busses 1.48 [g/km] 0.1693 [g/km] Gasohol Motorcycles 1.61 [g/km] 0.0000 [g/km] Flex Motorcycles 0.75 [g/km] 0.0000 [g/km] > > TOTAL <- totalEmission(veiculos,EmissionFactors,pol = c("CO"),verbose = TRUE) Total of CO : 1676996.43578795 t year-1 > > grid <- gridInfo(paste0(system.file("extdata", package = "EmissV"),"/wrfinput_d01")) Grid information from: /tmp/rdeps/EmissV.Rcheck/EmissV/extdata/wrfinput_d01 > shape <- raster::shapefile(paste0(system.file("extdata", package = "EmissV"),"/BR.shp")) > raster <- raster::raster(paste0(system.file("extdata", package = "EmissV"),"/dmsp.tiff")) > > SP <- areaSource(shape[22,1],raster,grid,name = "SP") processing SP area ... fraction of SP area inside the domain = 0.955761973247402> RJ <- areaSource(shape[17,1],raster,grid,name = "RJ") processing RJ area ... fraction of RJ area inside the domain = 0.748007015306122> > e_CO <- emission(TOTAL,"CO",list(SP = SP, RJ = RJ),grid,mm=28) calculating emissions for CO using molar mass = 28 ... Error in R_ut_remove_unit(name) : unknown unit name or symbol Calls: emission -> remove_symbolic_unit -> R_ut_remove_unit Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... ERROR Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Light Duty Vehicles Flex 3702131 2571986 1718932 Diesel Trucks 267227 185651 124076 Diesel Urban Busses 298061 207072 138392 Diesel Intercity Busses 8222 5712 3817 Gasohol Motorcycles 1213830 843285 563592 Flex Motorcycles 88390 61407 41040 vehicles: Category Type Fuel Use SP 1 B5 LDV NA 41 [km/d] 27332097 ══ testthat results ═══════════════════════════════════════════════════════════ OK: 18 SKIPPED: 0 FAILED: 1 1. Error: final emission works (@test-emission.R#21) Error: testthat unit tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 2 ERRORs
fixed and on CRAN
Schuch666
commented
5 years ago Schuch666
commented
5 years ago
I'm planning a new units submission to CRAN in about a week; it will break EmissV as of now.
Could you please look into this: