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att / rcloud

Collaborative data analysis and visualization
http://rcloud.social
MIT License
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Installation issues with Rcloud app #2709

Closed sunny143code closed 4 years ago

sunny143code commented 4 years ago

Hi @gordonwoodhull, I was created a docker image and it built without any issues but now I am seeing below build errors when it executes the "sh scripts/bootstarpR.sh" command: ERROR: dependencies ‘markdown’, ‘stringr’, ‘yaml’ are not available for package ‘knitr’

removing ‘/opt/R/3.6.1/lib/R/library/knitr’ ERROR: dependencies ‘Rcpp’, ‘guitar’ are not available for package ‘gitgist’ removing ‘/opt/R/3.6.1/lib/R/library/gitgist’ ERROR: dependencies ‘github’, ‘httr’ are not available for package ‘githubgist’ removing ‘/opt/R/3.6.1/lib/R/library/githubgist’ ERROR: dependencies ‘knitr’, ‘markdown’, ‘reticulate’, ‘jsonlite’ are not availa ble for package ‘rcloud.jupyter’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.jupyter’ ERROR: dependencies ‘knitr’, ‘markdown’ are not available for package ‘rcloud.py thon’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.python’ ERROR: dependencies ‘knitr’, ‘markdown’ are not available for package ‘rcloud.r’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.r’ ERROR: dependencies ‘knitr’, ‘rmarkdown’ are not available for package ‘rcloud.r markdown’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.rmarkdown’ ERROR: dependencies ‘rjson’, ‘RCurl’, ‘jsonlite’, ‘knitr’, ‘markdown’, ‘httr’, ‘ sendmailR’ are not available for package ‘rcloud.support’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.support’ ERROR: dependency ‘rcloud.support’ is not available for package ‘rcloud.enviewer ’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.enviewer’ ERROR: dependency ‘rcloud.support’ is not available for package ‘rcloud.lux’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.lux’ ERROR: dependency ‘rcloud.support’ is not available for package ‘rcloud.notebook .info’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.notebook.info’ ERROR: dependency ‘rcloud.support’ is not available for package ‘rcloud.viewer’ removing ‘/opt/R/3.6.1/lib/R/library/rcloud.viewer’ The downloaded source packages are in ‘/tmp/Rtmp4ZpN8d/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done There were 15 warnings (use warnings() to see them) Error in library(rcloud.support) : there is no package called ‘rcloud.support’ Execution halted

ERROR: one or more packages could not be installed. Please check that you have all necessary dependencies installed

Please do let me know if you know/find anything about it. Thanks.

gordonwoodhull commented 4 years ago

Looks like you are missing some dependencies for building some of the packages that RCloud needs.

For most Linux variants, the prerequisites listed at the top of

https://github.com/att/rcloud/blob/develop/doc/INSTALL.md

will be enough, but sometimes it takes some iteration.

In my experience, it is pretty hard to automate the process and I always need to search for the first error in the log, install whatever is missing, try again, watch it fail, search for the first error, install more, etc and so on.

sunny143code commented 4 years ago

Thanks @gordonwoodhull for the comment. I will look into it.

gordonwoodhull commented 4 years ago

I'm going to close this, since this is general purpose advice for this kind of error.

If you're still having trouble, please comment or open another issue.