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auerbachs / BMDExpress-2

Software for analyzing high dimensional dose-response data
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Platforms out of date in wiki #19

Open burgerga opened 3 years ago

burgerga commented 3 years ago

See https://github.com/auerbachs/BMDExpress-2/wiki/Additional-Information#supported-microarrays

Current list should be:

ID Name Provider Species
GPL1319 Zebrafish Genome Array Affymetrix Danio rerio
GPL1322 Drosophila Genome 2.0 Array Affymetrix Drosophila melanogaster
GPL72 Drosophila Genome Array Affymetrix Drosophila melanogaster
GPL13158 HT HG-U133+ PM Array Plate Affymetrix Homo sapiens
GPL201 Human HG-Focus Target Array Affymetrix Homo sapiens
GPL570 Human Genome U133 Plus 2.0 Array Affymetrix Homo sapiens
GPL571 Human Genome U133A 2.0 Array Affymetrix Homo sapiens
GPL96 Human Genome U133A Array Affymetrix Homo sapiens
GPL11180 HT MG-430 PM Array Plate Affymetrix Mus musculus
GPL1261 Mouse Genome 430 2.0 Array Affymetrix Mus musculus
GPL32 Murine Genome U74A Array Affymetrix Mus musculus
GPL339 Mouse Expression 430A Array Affymetrix Mus musculus
GPL340 Mouse Expression 430B Array Affymetrix Mus musculus
GPL81 Murine Genome U74A Version 2 Array Affymetrix Mus musculus
GPL8321 Mouse Genome 430A 2.0 Array Affymetrix Mus musculus
GPL1355 Rat Genome 230 2.0 Array Affymetrix Rattus norvegicus
GPL16985 HT RG-230 PM Array Plate Affymetrix Rattus norvegicus
GPL341 Rat Expression 230A Array Affymetrix Rattus norvegicus
GPL342 Rat Expression 230B Array Affymetrix Rattus norvegicus
GPL85 Rat Genome U34 Array Affymetrix Rattus norvegicus
GPL14664 026437 D. rerio (Zebrafish) Oligo Microarray V3 Agilent Danio rerio
GPL7300 018972 D. melanogaster (FruitFly) Oligo Microarray 4x44K G2519F Agilent Drosophila melanogaster
GPL6480 014850 Whole Human Genome Microarray 4x44K G4112F Agilent Homo sapiens
GPL11202 026655 Whole Mouse Genome Microarray 4x44K v2_GPL11202 Agilent Mus musculus
GPL21163 074809 SurePrint G3 Mouse GE v2 8x60K Microarray Agilent Mus musculus
GPL7202 014868 Whole Mouse Genome Microarray 4x44K G4122F Agilent Mus musculus
GPL14746 Agilent-028282 Whole Rat Genome Microarray 4x44K v3 Agilent Rattus norvegicus
GPL22145 074036 SurePrint G3 Rat GE v2 8x60K Microarray Agilent Rattus norvegicus
GPL7294 014879 Whole Rat Genome Microarray 4x44K G4131F Agilent Rattus norvegicus
EUToxRisk_Human EU_ToxRisk_Human BioSpyder Homo sapiens
S1500_Plus_Human S1500_Human BioSpyder Homo sapiens
S1500_Plus_Plus_Human S1500_Plus_Plus_Human_2.0 191113 BioSpyder Homo sapiens
WT_Human WT_Human BioSpyder Homo sapiens
S1500_Plus_Mouse S1500_Mouse BioSpyder Mus musculus
WT_Mouse WT_Mouse BioSpyder Mus musculus
S1500_Plus_Rat S1500_Rat BioSpyder Rattus norvegicus
WT_Rat WT_Rat BioSpyder Rattus norvegicus
danRer11_Ensembl danRer11_Ensembl Ensembl Danio rerio
dm6_Ensembl dm6_Ensembl Ensembl Drosophila melanogaster
hg38_Ensembl hg38_Ensembl Ensembl Homo sapiens
mm10_Ensembl mm10_Ensembl Ensembl Mus musculus
rn6_Ensembl rn6_Ensembl Ensembl Rattus norvegicus
Human_Genie Human_Genie Genie Homo sapiens
Mouse_Genie Mouse_Genie Genie Mus musculus
Rat_Genie Rat_Genie Genie Rattus norvegicus
GPL10558 HumanHT-12 V4.0 expression beadchip Illumina Homo sapiens
GPL6885 MouseRef-8 v2.0 expression beadchip Illumina Mus musculus
GPL6887 MouseWG-6 v2.0 expression beadchip Illumina Mus musculus
GPL6101 ratRef-12 v1.0 expression beadchip Illumina Rattus norvegicus
danRer10_RefSeq danRer10_RefSeq RefSeq Danio rerio
danRer11_RefSeq danRer11_RefSeq RefSeq Danio rerio
dm3_RefSeq dm3_RefSeq RefSeq Drosophila melanogaster
dm6_RefSeq dm6_RefSeq RefSeq Drosophila melanogaster
hg19_RefSeq hg19_RefSeq RefSeq Homo sapiens
hg38_RefSeq hg38_RefSeq RefSeq Homo sapiens
mm10_RefSeq mm10_RefSeq RefSeq Mus musculus
mm9_RefSeq mm9_RefSeq RefSeq Mus musculus
rn5_RefSeq rn5_RefSeq RefSeq Rattus norvegicus
rn6_RefSeq rn6_RefSeq RefSeq Rattus norvegicus

Here as md file for your convenience: bmdx_platforms.md

JoryC commented 1 month ago

As far as I can tell from the BMDExpress3 wiki section 'Supported Gene Expression Platforms', this still has not been updated. Thank you for opening this issue and providing the .md file @burgerga :)