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ave-dcd
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dcd_mapping
AVE DCD Mapping
MIT License
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Update README to indicate 0.1.3 dcd-mapping release
#75
jarbesfeld
closed
1 week ago
0
chore: remove notebook checkpoint
#74
jsstevenson
closed
2 weeks ago
0
Update requirements.txt file and notebooks README
#73
jarbesfeld
closed
2 weeks ago
0
Update mappings link in README
#72
jarbesfeld
closed
2 weeks ago
0
chore: add schema refresher
#71
jsstevenson
closed
2 weeks ago
0
Correct alignment logic, ensure proper variant selection for post-mapped genomic variants
#70
jarbesfeld
closed
2 weeks ago
2
Representing genomic variants that do not align to the human genome
#69
jarbesfeld
closed
2 weeks ago
0
Update alignment code for other/noncoding score sets
#68
jarbesfeld
closed
3 weeks ago
0
Fix typo for experiment set 97
#67
jarbesfeld
closed
3 weeks ago
0
Add check in transcript selection to determine if start and end coordinates fully bound an exon
#66
jarbesfeld
closed
3 weeks ago
0
Transcript Selection Query should check if alt_start_i and alt_end_i are between start and end
#65
jarbesfeld
closed
3 weeks ago
0
Update notebooks, alignment, and mapping code
#64
jarbesfeld
closed
1 month ago
1
fix: ensure proper ref seq
#63
jsstevenson
closed
3 months ago
0
cicd: update github actions versions
#62
jsstevenson
closed
3 months ago
0
style: update ruff
#61
jsstevenson
closed
3 months ago
0
cicd: update precommit and add new hooks
#60
jsstevenson
closed
3 months ago
0
fix: perform appropriate cleanup after seqrepo check
#59
jsstevenson
closed
3 months ago
0
test: fix fixture construction
#58
jsstevenson
closed
3 months ago
0
feat!: Use VRS 2.0 models as primary output
#57
jsstevenson
closed
1 month ago
0
build: pin dependencies
#56
jsstevenson
closed
3 months ago
0
build: provide docker-compose to build dependencies
#55
jsstevenson
opened
5 months ago
0
feat: add data prereq checks to CLI
#54
jsstevenson
closed
5 months ago
0
Add docker-compose
#53
jsstevenson
opened
5 months ago
0
dcd-map fails silently
#52
ahwagner
closed
5 months ago
1
PIs are sometimes bad users
#51
ahwagner
closed
5 months ago
0
docs: add zenodo badge
#50
jsstevenson
closed
5 months ago
0
chore: update author list
#49
jsstevenson
closed
5 months ago
0
nb: update reqs.txt
#48
jsstevenson
closed
5 months ago
0
feat: additional analysis refactoring
#47
jsstevenson
closed
5 months ago
0
April/May analysis refactor
#46
jsstevenson
closed
5 months ago
0
Error in step 17 of analysis notebook
#45
ahwagner
closed
5 months ago
0
Revise and link notebook titles
#44
ahwagner
closed
5 months ago
0
Create install directions
#43
ahwagner
closed
5 months ago
0
Update Zenodo for new revision
#42
jsstevenson
closed
5 months ago
0
refactor annotate and VRS_map modules
#41
jsstevenson
closed
5 months ago
0
Add GH release action
#40
jsstevenson
closed
5 months ago
0
feat: support ?/Xaa variants
#39
jsstevenson
closed
5 months ago
0
Add JSONSchema for mapping output
#38
jsstevenson
closed
5 months ago
0
Refactor VRS mapping/annotation modules
#37
jsstevenson
closed
5 months ago
0
Use MAVE-HGVS package for HGVS parsing
#36
jsstevenson
opened
5 months ago
0
docs: update READMEs
#35
jsstevenson
closed
5 months ago
0
test: reorganize + remove VRS tests from CI
#34
jsstevenson
closed
5 months ago
0
feat!: rename VRS 1.3 class
#33
jsstevenson
closed
5 months ago
0
build: require >=3.10
#32
jsstevenson
closed
5 months ago
0
Analysis refactor changes
#31
jsstevenson
closed
6 months ago
0
style: update ruff
#30
jsstevenson
closed
6 months ago
0
fix: handle latest mavedb API updates
#29
jsstevenson
closed
6 months ago
1
feat: enable configuration of BLAT binary path
#28
jsstevenson
closed
7 months ago
0
package development/refactor work
#27
jsstevenson
closed
9 months ago
0
Build reorg
#26
afrubin
closed
5 months ago
0
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