averagehat
commented
8 years ago Right now it takes all characters until it encounters a separator "-" or "_" or " " or the like. I could take the whole identifier instead. That might make the table a bit harder to read as a plain text file but I think it's better to use the whole identifier.
On Tue, Jun 7, 2016 at 9:50 AM, mmelendrez notifications@github.com wrote:
Please clarify in the README how many characters are allowed in the sequence identifier to 'show up' in the output. I had 4 conditions all beginning with "Q4":
Q4_1_NexteraRawCons Q4_1_KAPARawCons Q4_6_NexteraRawCons Q4_6_KAPARawCons
The output -
ID Codon NTPos AA AAPos RowType
Q4 RAA 1444 K/E 482 Non_Synonymous Q4 TWC 1676 Y/F 559 Non_Synonymous Q4 ARC 4025 N/S 1342 Non_Synonymous Q4 GAW 5991 E/D 1997 Non_Synonymous
Q4 RAA 1444 K/E 482 Non_Synonymous Q4 TWC 1676 Y/F 559 Non_Synonymous Q4 RCC 5620 T/A 1874 Non_Synonymous
Q4 RAA 1444 K/E 482 Non_Synonymous Q4 TWC 1676 Y/F 559 Non_Synonymous
Q4 RAA 1444 K/E 482 Non_Synonymous Q4 TWC 1676 Y/F 559 Non_Synonymous Q4 RTR 7939,7941 I/M/V 2647 Non_Synonymous
As you can see I don't know which conditions is which as the identifiers were cut off. So it would be helpful to know how many characters I am allowed or that an underscore won't work in identifier names etc...
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mmelendrez
Please clarify in the README how many characters are allowed in the sequence identifier to 'show up' in the output. I had 4 conditions all beginning with "Q4":
The output -
As you can see I don't know which conditions is which as the identifiers were cut off. So it would be helpful to know how many characters I am allowed or that an underscore won't work in identifier names etc...