Open averagehat opened 5 years ago
ete has NCBITaxa which uses an sqlite database that gives occasional concurrent access errors.
ete
NCBITaxa
Supposedly it's possible to fetch the taxonomy using blastn on its own if you run it in the correct directory or something.@mousepixels
blastn
See:
https://github.com/lskatz/taxdb https://github.com/jrjhealey/PYlogeny https://github.com/onecodex/taxonomy https://github.com/pvanheus/ncbitaxonomy https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/taxonomy-guide/ https://bioinf.shenwei.me/taxonkit/
etehasNCBITaxawhich uses an sqlite database that gives occasional concurrent access errors.Supposedly it's possible to fetch the taxonomy using
blastnon its own if you run it in the correct directory or something.@mousepixelsSee:
https://github.com/lskatz/taxdb https://github.com/jrjhealey/PYlogeny https://github.com/onecodex/taxonomy https://github.com/pvanheus/ncbitaxonomy https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/taxonomy-guide/ https://bioinf.shenwei.me/taxonkit/