avierstr
commented
2 years ago No, that option is not available. Good idea to implement that in the future.
A workaround is to create a text file with the command for each file on separate line. Change the properties of the file to "executable" and run the file with the command ./text_file
On 8/11/2022 1:07, Scott-Godwin wrote:
Is it possible to run amplicon_sorter with multiple input files, and have each one output to a separate directory?
My amplicon sequencing work usually involves using barcoded libraries consisting of multiple samples. After demultiplexing, I have multiple .fasta files, each containing a set of reads for one sample. So far the only way I have found to generate a consensus for each of these is to run amplicon sorter repeatedly, once for each barcode.
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Scott-Godwin
Is it possible to run amplicon_sorter with multiple input files, and have each one output to a separate directory?
My amplicon sequencing work usually involves using barcoded libraries consisting of multiple samples. After demultiplexing, I have multiple .fasta files, each containing a set of reads for one sample. So far the only way I have found to generate a consensus for each of these is to run amplicon sorter repeatedly, once for each barcode.