Closed dilawar closed 9 years ago
I used python setup.py install and run the following script.
python setup.py install
python insertSpines.py In doLoadModel for SWC ReadSwc: barrionuevo_cell1zr.CNG.swc : NumSegs = 2246, bad = 0, Validated = 1, numBranches = 147 ReadSwc::diagnostics: undef : 0 ReadSwc::diagnostics: soma : 1 ReadSwc::diagnostics: axon : 221 ReadSwc::diagnostics: dend : 785python insertSpines.py In doLoadModel for SWC ReadSwc: barrionuevo_cell1zr.CNG.swc : NumSegs = 2246, bad = 0, Validated = 1, numBranches = 147 ReadSwc::diagnostics: undef : 0 ReadSwc::diagnostics: soma : 1 ReadSwc::diagnostics: axon : 221 ReadSwc::diagnostics: dend : 785 ReadSwc::diagnostics: apical : 1093 ReadSwc::diagnostics: dend_f : 23 ReadSwc::diagnostics: dend_e : 29 ReadSwc::diagnostics: custom : 0 ReadSwc::diagnostics: bad : 0 ReadSwc::diagnostics: undef : 0 ReadSwc::diagnostics: axon_f : 6 ReadSwc::diagnostics: axon_e : 7 ReadSwc::diagnostics: apical_f : 40 ReadSwc::diagnostics: apical_e : 41 Rdesigneur: Elec model has 2246 compartments and 3795 spines on 0 compartments. Traceback (most recent call last): File "insertSpines.py", line 84, in <module> main() File "insertSpines.py", line 60, in main morphology = moogli.read_morphology_from_moose(name = "", path = "/model/elec") File "/home_local/dilawars/Work/GITHUB/BhallaLab/moogli/moogli/main.py", line 80, in read_morphology_from_moose morphology = _moogli.Morphology(name, 1) AttributeError: 'module' object has no attribute 'Morphology'
I'll wait till Travis builds are OK.
Update the library properly. You need to use the geometry branch. Also remember to update moose-examples.
Fixed.
I used
python setup.py install
and run the following script.I'll wait till Travis builds are OK.