Open awhite40 opened 9 years ago
Objective:
Find centers of fibers
a. Segment with more values to remove edges of “fibers†in images
i. So it means we will have to fit our histogram with more number of peaks.
ii. We may have to play with number of bins also
b. Labeling fibers bwlabeln - seperate individual fibers
c. Compare with the confidence intervals - needs to be improved in the code
Fiber orientation
a. Gradients - help get straightness
i. jacobian
ii. try on sample image (one fiber)
Image smoothing
a. subtract images from shifted image
b. matlab functions
c. (subtracting average from image)*original
Look for fibers that cross the volume
volume of them will be related to processing condition
@tonyfast Here is a matlab function I was looking at for finding directionality. http://www.mathworks.com/matlabcentral/fileexchange/24409-hessian-based-frangi-vesselness-filter
Objective:
Find centers of fibers
a. Segment with more values to remove edges of “fibers†in images
i. So it means we will have to fit our histogram with more number of peaks.
ii. We may have to play with number of bins also
b. Labeling fibers bwlabeln - seperate individual fibers
c. Compare with the confidence intervals - needs to be improved in the code
Fiber orientation
a. Gradients - help get straightness
i. jacobian
ii. try on sample image (one fiber)
Image smoothing
a. subtract images from shifted image
b. matlab functions
c. (subtracting average from image)*original
Look for fibers that cross the volume
volume of them will be related to processing condition