Handling of semi-missing genotype data

awilfert / PSAP-pipeline

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Handling of semi-missing genotype data #9

Open dconrad opened 7 years ago

dconrad commented 7 years ago

It is possible to report a "semi-missing" genotype call , for instance 0/., in the current VCF spec. These genotypes are currently being defaulted to heterozygous in the PSAP pipeline.