Issue:
When running Dragen in pedigree mode, Dragen quickstart is not able to download the pedigree table from S3.
command submitted:
-f -r /ephemeral/Dragen_aws_test/dragen_ref/hs37d5/ --enable-joint-genotyping true --output-file-prefix M00022008-B-D_20220211-trio --output-directory /ephemeral/27545a9f-2acb-4d84-9a0f-00cd5d89ac7b --pedigree-file s3://bucket/M00022008-B-D_20220211/M00022008.ped --variant s3://bucket/M00022008-B-D_20220211.hard-filtered.gvcf.gz --variant s3://bucket/M00022006-B-D_20220211.hard-filtered.gvcf.gz --variant s3://bucket/M00022005-B-D_20220211.hard-filtered.gvcf.gz
Dragen log:
Assertion failed in ../src/host/dragen_api/file_io/pedigree.cpp line 24 -- false -- ERROR: Could not open pedigree file: s3://bucket/M00022008.ped
vsnyc
commented
1 year ago
Issue: When running Dragen in pedigree mode, Dragen quickstart is not able to download the pedigree table from S3. command submitted: -f -r /ephemeral/Dragen_aws_test/dragen_ref/hs37d5/ --enable-joint-genotyping true --output-file-prefix M00022008-B-D_20220211-trio --output-directory /ephemeral/27545a9f-2acb-4d84-9a0f-00cd5d89ac7b --pedigree-file s3://bucket/M00022008-B-D_20220211/M00022008.ped --variant s3://bucket/M00022008-B-D_20220211.hard-filtered.gvcf.gz --variant s3://bucket/M00022006-B-D_20220211.hard-filtered.gvcf.gz --variant s3://bucket/M00022005-B-D_20220211.hard-filtered.gvcf.gz
Dragen log: Assertion failed in ../src/host/dragen_api/file_io/pedigree.cpp line 24 -- false -- ERROR: Could not open pedigree file: s3://bucket/M00022008.ped