aws-samples / amazon-omics-tutorials

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container-puller: use cwl-utils to automatically extract the container names #45

Open mr-c opened 6 months ago

mr-c commented 6 months ago

Shouldn't be too much work to modify https://github.com/common-workflow-language/cwl-utils/blob/main/cwl_utils/docker_extract.py to just print the container names instead of downloading them.

For a pure typescript approach, https://github.com/common-workflow-lab/cwl-ts-auto could be used ; though some documents would need to be upgraded to CWL v1.2 first using one of the automated upgraders.