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AWS Glue Libraries are additions and enhancements to Spark for ETL operations.
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Cannot write to minio S3 docker storage via s3a #112

Closed archenroot closed 2 years ago

archenroot commented 2 years ago

As part of establishment of local docker based env for development I made up and running minio s3 storage. My command line cli mc (provided by minio) and also some boto3 based scripts works just fine, but I cannot get working pyspark script as bellow:

import sys
import io
from awsglue.transforms import *
from awsglue.utils import getResolvedOptions
from pyspark.context import SparkContext
from awsglue.context import GlueContext
from awsglue.job import Job

from botocore.client import Config
import zipfile

spark = GlueContext(SparkContext.getOrCreate())
# spark._jsc.hadoopConfiguration().set("fs.s3a.impl", "org.apache.hadoop.fs.s3n.S3NFileSystem")
# spark._jsc.hadoopConfiguration().set("com.amazonaws.sdk.disableCertChecking","true")
# spark._jsc.hadoopConfiguration().set("fs.s3n.endpoint", 'http://192.168.88.100:9000')
# spark._jsc.hadoopConfiguration().set("fs.s3n.awsAccessKeyId", 'newuser')
# spark._jsc.hadoopConfiguration().set("fs.s3n.awsSecretAccessKey", 'newuser123')
# spark._jsc.hadoopConfiguration().set("fs.s3n.connection.ssl.enabled", "false")

spark._jsc\
     .hadoopConfiguration().set("fs.s3a.access.key", "minio")
spark._jsc\
     .hadoopConfiguration().set("fs.s3a.secret.key", "newuser123")
spark._jsc\
      .hadoopConfiguration().set("fs.s3a.endpoint", "http://192.168.88.100:9000")
spark._jsc\
      .hadoopConfiguration().set("spark.hadoop.fs.s3a.impl", "org.apache.hadoop.fs.s3a.S3AFileSystem")
spark._jsc\
      .hadoopConfiguration().set("spark.hadoop.fs.s3a.path.style.access", "true")
spark._jsc\
      .hadoopConfiguration().set("fs.s3a.multipart.size", "104857600")
spark._jsc\
      .hadoopConfiguration().set("fs.s3a.connection.ssl.enabled", "false")

df = spark.read.format('csv').options(header='true', inferSchema='true').load('s3a://cmg-oasis-dev-veeva-datasource/outbound/weekly/year=2021/month=11/day=26/unzipped/AMS_PHY_DY_PROVIDER_TS11262021.txt')

df.printSchema()

df.show()

I get this log:

An error was encountered:
An error occurred while calling o79.load.
: java.nio.file.AccessDeniedException: s3a://cmg-oasis-dev-veeva-datasource/outbound/weekly/year=2021/month=11/day=26/unzipped/AMS_PHY_DY_PROVIDER_TS11262021.txt: getFileStatus on s3a://cmg-oasis-dev-veeva-datasource/outbound/weekly/year=2021/month=11/day=26/unzipped/AMS_PHY_DY_PROVIDER_TS11262021.txt: com.amazonaws.services.s3.model.AmazonS3Exception: Forbidden (Service: Amazon S3; Status Code: 403; Error Code: 403 Forbidden; Request ID: 16C14703855046DE; S3 Extended Request ID: null; Proxy: null), S3 Extended Request ID: null:403 Forbidden
    at org.apache.hadoop.fs.s3a.S3AUtils.translateException(S3AUtils.java:230)
    at org.apache.hadoop.fs.s3a.S3AUtils.translateException(S3AUtils.java:151)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.s3GetFileStatus(S3AFileSystem.java:2239)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.innerGetFileStatus(S3AFileSystem.java:2204)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.getFileStatus(S3AFileSystem.java:2143)
    at org.apache.hadoop.fs.FileSystem.isDirectory(FileSystem.java:1707)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.isDirectory(S3AFileSystem.java:3042)
    at org.apache.spark.sql.execution.streaming.FileStreamSink$.hasMetadata(FileStreamSink.scala:47)
    at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:376)
    at org.apache.spark.sql.DataFrameReader.loadV1Source(DataFrameReader.scala:326)
    at org.apache.spark.sql.DataFrameReader.$anonfun$load$3(DataFrameReader.scala:308)
    at scala.Option.getOrElse(Option.scala:189)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:308)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:240)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:282)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:238)
    at java.lang.Thread.run(Thread.java:748)
Caused by: com.amazonaws.services.s3.model.AmazonS3Exception: Forbidden (Service: Amazon S3; Status Code: 403; Error Code: 403 Forbidden; Request ID: 16C14703855046DE; S3 Extended Request ID: null; Proxy: null), S3 Extended Request ID: null
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.handleErrorResponse(AmazonHttpClient.java:1819)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.handleServiceErrorResponse(AmazonHttpClient.java:1403)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeOneRequest(AmazonHttpClient.java:1372)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeHelper(AmazonHttpClient.java:1145)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.doExecute(AmazonHttpClient.java:802)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeWithTimer(AmazonHttpClient.java:770)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.execute(AmazonHttpClient.java:744)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.access$500(AmazonHttpClient.java:704)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutionBuilderImpl.execute(AmazonHttpClient.java:686)
    at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:550)
    at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:530)
    at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:5267)
    at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:5214)
    at com.amazonaws.services.s3.AmazonS3Client.getObjectMetadata(AmazonS3Client.java:1361)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$getObjectMetadata$4(S3AFileSystem.java:1290)
    at org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:322)
    at org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:285)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.getObjectMetadata(S3AFileSystem.java:1287)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.s3GetFileStatus(S3AFileSystem.java:2224)
    ... 22 more

Traceback (most recent call last):
  File "/home/glue_user/spark/python/pyspark/sql/readwriter.py", line 204, in load
    return self._df(self._jreader.load(path))
  File "/home/glue_user/spark/python/lib/py4j-0.10.9-src.zip/py4j/java_gateway.py", line 1305, in __call__
    answer, self.gateway_client, self.target_id, self.name)
  File "/home/glue_user/spark/python/pyspark/sql/utils.py", line 111, in deco
    return f(*a, **kw)
  File "/home/glue_user/spark/python/lib/py4j-0.10.9-src.zip/py4j/protocol.py", line 328, in get_return_value
    format(target_id, ".", name), value)
py4j.protocol.Py4JJavaError: An error occurred while calling o79.load.
: java.nio.file.AccessDeniedException: s3a://cmg-oasis-dev-veeva-datasource/outbound/weekly/year=2021/month=11/day=26/unzipped/AMS_PHY_DY_PROVIDER_TS11262021.txt: getFileStatus on s3a://cmg-oasis-dev-veeva-datasource/outbound/weekly/year=2021/month=11/day=26/unzipped/AMS_PHY_DY_PROVIDER_TS11262021.txt: com.amazonaws.services.s3.model.AmazonS3Exception: Forbidden (Service: Amazon S3; Status Code: 403; Error Code: 403 Forbidden; Request ID: 16C14703855046DE; S3 Extended Request ID: null; Proxy: null), S3 Extended Request ID: null:403 Forbidden
    at org.apache.hadoop.fs.s3a.S3AUtils.translateException(S3AUtils.java:230)
    at org.apache.hadoop.fs.s3a.S3AUtils.translateException(S3AUtils.java:151)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.s3GetFileStatus(S3AFileSystem.java:2239)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.innerGetFileStatus(S3AFileSystem.java:2204)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.getFileStatus(S3AFileSystem.java:2143)
    at org.apache.hadoop.fs.FileSystem.isDirectory(FileSystem.java:1707)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.isDirectory(S3AFileSystem.java:3042)
    at org.apache.spark.sql.execution.streaming.FileStreamSink$.hasMetadata(FileStreamSink.scala:47)
    at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:376)
    at org.apache.spark.sql.DataFrameReader.loadV1Source(DataFrameReader.scala:326)
    at org.apache.spark.sql.DataFrameReader.$anonfun$load$3(DataFrameReader.scala:308)
    at scala.Option.getOrElse(Option.scala:189)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:308)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:240)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:282)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:238)
    at java.lang.Thread.run(Thread.java:748)
Caused by: com.amazonaws.services.s3.model.AmazonS3Exception: Forbidden (Service: Amazon S3; Status Code: 403; Error Code: 403 Forbidden; Request ID: 16C14703855046DE; S3 Extended Request ID: null; Proxy: null), S3 Extended Request ID: null
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.handleErrorResponse(AmazonHttpClient.java:1819)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.handleServiceErrorResponse(AmazonHttpClient.java:1403)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeOneRequest(AmazonHttpClient.java:1372)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeHelper(AmazonHttpClient.java:1145)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.doExecute(AmazonHttpClient.java:802)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeWithTimer(AmazonHttpClient.java:770)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.execute(AmazonHttpClient.java:744)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutor.access$500(AmazonHttpClient.java:704)
    at com.amazonaws.http.AmazonHttpClient$RequestExecutionBuilderImpl.execute(AmazonHttpClient.java:686)
    at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:550)
    at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:530)
    at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:5267)
    at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:5214)
    at com.amazonaws.services.s3.AmazonS3Client.getObjectMetadata(AmazonS3Client.java:1361)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$getObjectMetadata$4(S3AFileSystem.java:1290)
    at org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:322)
    at org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:285)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.getObjectMetadata(S3AFileSystem.java:1287)
    at org.apache.hadoop.fs.s3a.S3AFileSystem.s3GetFileStatus(S3AFileSystem.java:2224)
    ... 22 more

Could it be some missing hadoop library? or any other hints?

archenroot commented 2 years ago

Could it be missing AWS java sdk bundle and hadoop aws dependency missing in container of glue? eg something like: - PYSPARK_SUBMIT_ARGS=--packages com.amazonaws:aws-java-sdk-bundle:1.11.819,org.apache.hadoop:hadoop-aws:3.2.0 pyspark-shell Above is from working Spark 3.0 jupyter and s3 integration via spark...thx for any kind of comments here.

archenroot commented 2 years ago

I am closing it as found a way to replace core site.xml config