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awslabs / dgl-ke

High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.
https://dglke.dgl.ai/doc/
Apache License 2.0
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[BUG] Quick start example code does not work #267

Open rnyak opened 2 years ago

rnyak commented 2 years ago

Hello, I installed the dgl and dglke as stated in the quick start and when I test the code below I get an error:

DGLBACKEND=pytorch dglke_train --model_name TransE_l2 --dataset FB15k --batch_size 1000 \
--neg_sample_size 200 --hidden_dim 400 --gamma 19.9 --lr 0.25 --max_step 500 --log_interval 100 \
--batch_size_eval 16 -adv --regularization_coef 1.00E-09 --test --num_thread 1 --num_proc 8
Reading train triples....
Finished. Read 483142 train triples.
Reading valid triples....
Finished. Read 50000 valid triples.
Reading test triples....
Finished. Read 59071 test triples.
|Train|: 483142
random partition 483142 edges into 8 parts
part 0 has 60393 edges
part 1 has 60393 edges
part 2 has 60393 edges
part 3 has 60393 edges
part 4 has 60393 edges
part 5 has 60393 edges
part 6 has 60393 edges
part 7 has 60391 edges
/usr/local/lib/python3.8/dist-packages/dgl/heterograph.py:72: DGLWarning: Recommend creating graphs by `dgl.graph(data)` instead of `dgl.DGLGraph(data)`.
  dgl_warning('Recommend creating graphs by `dgl.graph(data)`'
/usr/local/lib/python3.8/dist-packages/dgl/heterograph.py:83: DGLWarning: Keyword arguments ['readonly', 'multigraph', 'sort_csr'] are deprecated in v0.5, and can be safely removed in all cases.
  dgl_warning('Keyword arguments {} are deprecated in v0.5, and can be safely'
Traceback (most recent call last):
  File "/usr/local/bin/dglke_train", line 8, in <module>
    sys.exit(main())
  File "/usr/local/lib/python3.8/dist-packages/dglke/train.py", line 118, in main
    train_sampler_head = train_data.create_sampler(args.batch_size,
  File "/usr/local/lib/python3.8/dist-packages/dglke/dataloader/sampler.py", line 379, in create_sampler
    return EdgeSampler(self.g,
  File "/usr/local/lib/python3.8/dist-packages/dgl/contrib/sampling/sampler.py", line 683, in __init__
    self._sampler = _CAPI_CreateUniformEdgeSampler(
  File "dgl/_ffi/_cython/./function.pxi", line 293, in dgl._ffi._cy3.core.FunctionBase.__call__
  File "dgl/_ffi/_cython/./function.pxi", line 239, in dgl._ffi._cy3.core.FuncCall
dgl._ffi.base.DGLError: [18:41:08] /opt/dgl/include/dgl/packed_func_ext.h:117: Check failed: ObjectTypeChecker<TObjectRef>::Check(sptr.get()): Expected type graph.Graph but get graph.HeteroGraph
Stack trace:
  [bt] (0) /usr/local/lib/python3.8/dist-packages/dgl/libdgl.so(dmlc::LogMessageFatal::~LogMessageFatal()+0x4f) [0x7fc26d0546ef]
  [bt] (1) /usr/local/lib/python3.8/dist-packages/dgl/libdgl.so(dgl::GraphRef dgl::runtime::DGLArgValue::AsObjectRef<dgl::GraphRef>() const+0x264) [0x7fc26d36eab4]
  [bt] (2) /usr/local/lib/python3.8/dist-packages/dgl/libdgl.so(+0x521660) [0x7fc26d3d4660]
  [bt] (3) /usr/local/lib/python3.8/dist-packages/dgl/libdgl.so(+0x522234) [0x7fc26d3d5234]
  [bt] (4) /usr/local/lib/python3.8/dist-packages/dgl/libdgl.so(DGLFuncCall+0x48) [0x7fc26d31c118]
  [bt] (5) /usr/local/lib/python3.8/dist-packages/dgl/_ffi/_cy3/core.cpython-38-x86_64-linux-gnu.so(+0x16083) [0x7fc26ca15083]
  [bt] (6) /usr/local/lib/python3.8/dist-packages/dgl/_ffi/_cy3/core.cpython-38-x86_64-linux-gnu.so(+0x1686b) [0x7fc26ca1586b]
  [bt] (7) /usr/bin/python3(_PyObject_MakeTpCall+0x296) [0x5f74f6]
  [bt] (8) /usr/bin/python3(_PyEval_EvalFrameDefault+0x59b5) [0x570d55]

is there a quick fix to that error? thanks.

PoloWitty commented 1 year ago

I get the same error, too! So I tried to use another version of dgl and dgl-ke to fix this. After I try to install dgl-ke from source and use dgl of version dgl-cu113 0.8.0. The code report another error:

Traceback (most recent call last):
  File "/anaconda/envs/dgl-ke/bin/dglke_train", line 33, in <module>
    sys.exit(load_entry_point('dglke==0.1.0.dev0', 'console_scripts', 'dglke_train')())
  File "/anaconda/envs/dgl-ke/bin/dglke_train", line 25, in importlib_load_entry_point
    return next(matches).load()
  File "/anaconda/envs/dgl-ke/lib/python3.10/importlib/metadata/__init__.py", line 171, in load
    module = import_module(match.group('module'))
  File "/anaconda/envs/dgl-ke/lib/python3.10/importlib/__init__.py", line 126, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1006, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 688, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 883, in exec_module
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "/anaconda/envs/dgl-ke/lib/python3.10/site-packages/dglke-0.1.0.dev0-py3.10.egg/dglke/train.py", line 23, in <module>
  File "/anaconda/envs/dgl-ke/lib/python3.10/site-packages/dglke-0.1.0.dev0-py3.10.egg/dglke/dataloader/__init__.py", line 21, in <module>
  File "/anaconda/envs/dgl-ke/lib/python3.10/site-packages/dglke-0.1.0.dev0-py3.10.egg/dglke/dataloader/sampler.py", line 23, in <module>
ModuleNotFoundError: No module named 'dgl.backend'
PoloWitty commented 1 year ago

Oh! I find a way to solve this bug thanks to @guillaume-be's PR.

The step is as followed:

# install dgl-cu113 of version 0.8.2
pip install dgl-cu113==0.8.2 dglgo -f https://data.dgl.ai/wheels/repo.html

# install dgl-ke using newest version (the version in pypi hasn't been updated to the newest one on github)
git clone https://github.com/awslabs/dgl-ke.git
cd dgl-ke/python
python setup.py install

I think this might be able to solve your issuse, too.

AndroidSheepy commented 1 year ago

Oh! I find a way to solve this bug thanks to @guillaume-be's PR.

The step is as followed:

# install dgl-cu113 of version 0.8.2
pip install dgl-cu113==0.8.2 dglgo -f https://data.dgl.ai/wheels/repo.html

# install dgl-ke using newest version (the version in pypi hasn't been updated to the newest one on github)
git clone https://github.com/awslabs/dgl-ke.git
cd dgl-ke/python
python setup.py install

I think this might be able to solve your issuse, too.

Please notice that if you don't have the root privilege, you should run "python setup.py install --user".

PoloWitty commented 1 year ago

BTW, I made a docker image and readme for easier usage. Feel free to use it if this is helpful to anyone who see this :) https://hub.docker.com/repository/docker/yangzhep/kge/general