Package import error in notebook

awslabs / guidance-for-multi-omics-and-multi-modal-data-integration-and-analysis-on-aws

This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale analysis and perform interactive queries against a data lake. The solution also demonstrates the use of Amazon Omics for multi-modal analysis.

https://aws.amazon.com/solutions/guidance/multi-omics-and-multi-modal-data-integration-and-analysis/

Apache License 2.0

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Package import error in notebook #1

Open jbdamask opened 3 years ago

jbdamask commented 3 years ago

File: genomics-tertiary-analysis-and-data-lakes-using-aws-glue-and-amazon-athena/source/GenomicsAnalysisCode/resources/notebooks/runbook.ipynb

Environment: Current version of Sagemaker Jupyter and JupyterLab (as of June 2021)

Bug: Notebook fails to run due to package import error

Error: ImportError: cannot import name 'as_pandas'

Fix: from pyathena.util import as_pandas -> change to -> from pyathena.pandas.util import as_pandas

rulaszek commented 2 years ago

Sorry this took so long but this issue is fixed. We've also deployed a new version of the guidance with support for multimodal analysis in collaboration with BioTeam.