Open hermancollin opened 7 months ago
For future reference, this project is almost complete. More details on this repo: www.github.com/axondeepseg/model_seg_nerve
Update: our collaborator provided a lot of manual measurements so we will be able to accurately evaluate our method.
Our collaborator wants to compute the axon density in his images. We have a shared OneDrive folder with him containing hundreds of images; segmentations and morphometrics are already computed. He wants to compute the axon density. To do so, we will train a model to segment the total nerve area per image. For example, the img below contains 5 fascicles. The mask we want will delimit the inner area inside the perineurium
After this, we will be able to do 2 things:
We will thus be able to compute a new metric for this data and improve the current segmentation quality. Here is a somewhat exhaustive TODO list: