axondeepseg / sam_myelin_seg_TEM

Axon and Myelin segmentation using FAIR's Segment-Anything-Model (SAM)
MIT License
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Train object detection model to predict axon centroids #12

Open hermancollin opened 11 months ago

hermancollin commented 11 months ago

Pretty straightforward. This would make this pipeline fully automatic.

From my understanding, it would be possible to get accurate results because the SOTAs for object detection are pretty powerful. Also, the data is already there. For other datasets than TEM, some minor preprocessing would be required to get the axon centroids.