An easy way to get the whole genome expected interaction matrix

ay-lab / FitHiChIP

Statistically Significant loops from HiChIP data

MIT License

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An easy way to get the whole genome expected interaction matrix #103

Open zhangylab opened 10 months ago

zhangylab commented 10 months ago

FitHiChIP is an explicit and clearly written normalization method for HiChIP data processing. Beyond significant loop calling, I want to develop a genome-wide background model by using FitHiChIP-produced bias, regression coefficients and splines. So I wander how to access these regression coefficients and splines in addition to the bias values in an easy way. Thanks.

ay-lab commented 7 months ago

Hi @zhangylab Please check the outputs "Bin_Info.log" and "*.interactions_FitHiC.bed" in the FitHiChIP output folder.