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ay-lab / dcHiC

dcHiC: Differential compartment analysis for Hi-C datasets
MIT License
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Issue with pandoc #100

Closed Weiming113 closed 1 month ago

Weiming113 commented 1 month ago

Hi,

Thanks for developing dcHiC. I encountered an issue with pandoc. The error information was at below:

Error in pandoc_self_contained_html(file, file) : Saving a widget with selfcontained = TRUE requires pandoc. See here to learn more https://bookdown.org/yihui/rmarkdown-cookbook/install-pandoc.html Calls: subcompartment ... -> -> pandoc_self_contained_html In addition: There were 50 or more warnings (use warnings() to see the first 50) Execution halted

Could you please help me check it?

Weiming113 commented 1 month ago

sessionInfo() R version 4.2.3 (2023-03-15) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur ... 10.16

Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] compiler_4.2.3

ay-lab commented 1 month ago

This is something new! Can you run without the pandoc?

Weiming113 commented 1 month ago

This is something new! Can you run without the pandoc?

Thanks for your response. I have resolved it out. It cannot be run through without pandoc. But the pandoc should be installed using brew install pandoc.

ay-lab commented 1 month ago

Great to know that! Thanks.