I found that the chromosome text file does not include the "chr" substring in the chromosomes. The default chromosomes in dihic.py for human and mice genomes also do not have the "chr” substring. However, the chromosomes in goldenpathData and blacklist data have the "chr" substring. Does this will cause some problems when running dcHiC?
Dear,
I found that the chromosome text file does not include the "chr" substring in the chromosomes. The default chromosomes in
dihic.py
for human and mice genomes also do not have the "chr” substring. However, the chromosomes in goldenpathData and blacklist data have the "chr" substring. Does this will cause some problems when running dcHiC?Best wishes, zheng zhuqing