With the following error:
Traceback (most recent call last):
File "/path/dchic/differentialCalling.py", line 469, in
main()
File "/path/dchic/differentialCalling.py", line 363, in main
checkInputs(0)
File "/path/dchic/differentialCalling.py", line 205, in checkInputs
names.append(temp[0])
IndexError: list index out of range
It seems that some of the files might not have the correct format. But it is strange , because the previous part of the code is running totally fine, getting the expected outputs.
I have a couple of samples per condition. My inputs looks like:
Hi! Congrats for the nice tool!
I am a bit puzzled at the very end of running dcHiC.py where it launches the differential calling:
python /path/dchic/differentialCalling.py -inputFile input.txt -chrFile chromosomes.txt -multiComp 1 -makePlots 1 -res 100000 -genome mm10 -blacklist /path/dcHiC/files/mm10blacklist_sorted.bed
With the following error: Traceback (most recent call last): File "/path/dchic/differentialCalling.py", line 469, in
main()
File "/path/dchic/differentialCalling.py", line 363, in main
checkInputs(0)
File "/path/dchic/differentialCalling.py", line 205, in checkInputs
names.append(temp[0])
IndexError: list index out of range
It seems that some of the files might not have the correct format. But it is strange , because the previous part of the code is running totally fine, getting the expected outputs.
I have a couple of samples per condition. My inputs looks like:
ctl.1 CTL /path/ctl.Rep1 ctl.2 CTL /path/ctl.Rep2 exp.1 EXP /path/exp.Rep1 exp.2 EXP /path/exp.Rep2
If I include -repParams it still gives me the same error. I will really appreciate if you could clarify. Thanks in advance
Kind regards,
S.