Closed biozzq closed 3 years ago
Hello,
I am not sure what the root of the error is here; the qt error appears to be coming from matplotlib being unable to "find" a display plugin. It should be noted, however, that these plots look like the image below; they are simply pairwise comparisons of all same-cell replicates to visualize the concordance in PC values between replicates.
You can see these statistics in the "chrdistances.txt" file, which has the mean and standard deviation of replicate PC value variation from the fitted linear model. In general, values below 0.3-0.4 indicate good replicate concordance.
Dear all,
I found that the dcHiC can not be finished smoothly, giving following standard error and the
ReplicateImages
directory is empty.According to the standard out, i need run following command to summarize the results (note that i have turned off the opinion
-makePlots
);python differentialCalling.py -inputFile input.txt -chrFile chr.txt -res 100000 -genome mm10 -blacklist mm10-blacklist.v2.bed
If possible, can you save these figures but not visual.
Best wishes, Zheng zhuqing