Closed robomics closed 1 year ago
Hi,
Congrats for the recent publication on NatCom!
I am sharing 3 PRs (this is the first one) with some small changes I had to apply to make dcHiC run smoothly on my machines (all running various flavors of Linux).
This PR updates dchic.yml as follows:
dchic.yml
fithic>=2.0.8
dchicf.r ... fithic
python>=3.7
pandoc
dchic.r ... viz
igv-reports
conda
pip
Thank you for raising the PR's, Roberto! Just tested these changes locally; merging PR now.
Hi,
Congrats for the recent publication on NatCom!
I am sharing 3 PRs (this is the first one) with some small changes I had to apply to make dcHiC run smoothly on my machines (all running various flavors of Linux).
This PR updates
dchic.yml
as follows:fithic>=2.0.8
: required to rundchicf.r ... fithic
(thanks to https://github.com/bioconda/bioconda-recipes/commit/461e6de3cb72a29dfd1050c85fe4b9d4d6cdf058, this does no longer cause issues with env usingpython>=3.7
)pandoc
: required to rundchic.r ... viz
igv-reports
directly withconda
instead of usingpip