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ay-lab / dcHiC

dcHiC: Differential compartment analysis for Hi-C datasets
MIT License
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hashmap #49

Closed EnrichettaMileti closed 1 year ago

EnrichettaMileti commented 1 year ago

Hi! I installed the latest version of dchic. Everything is fine but I can't install hashmap. I'm using R version 3.6.1 and I saw that hashmap was build in version 3.2.1 When I tried to install on version 3.2.1 and I have the issue with the R library bigstatsr that I can't install for that R version. Any suggestion?

ay-lab commented 1 year ago

Hi,

What is the error you're getting with hasmap installation? Did you try to install it through the command line? $ R CMD INSTALL hashmap_0.2.2.tar.gz

For such cases, you can directly download the tar.gz file https://cran.r-project.org/src/contrib/bigstatsr_1.5.12.tar.gz and install it from the command line as - $ R CMD INSTALL bigstatsr_1.5.12.tar.gz

Hopefully, this will resolve the issue unless bigstatr has other dependency issues. In that case, you probably need to install the packages one at a time or upgrade your R version.

Let me know how it goes.

EnrichettaMileti commented 1 year ago

Thanks for your reply. An additional question: Which R version do you recommend to use for installing all the packages? Thanks

ay-lab commented 1 year ago

I have tested this in R 3.3.3, and R 4.0. I also don't think you will have any issues in between.