Closed kalavattam closed 3 years ago
Hi There!
Thank you so much for this feedback. The bed file you used in the format of "mm10_gene_pos.bed" is in the right format (the documentation has been updated & files have been added to the "files" folder to clarify this).
It appears there was a small error in the repo that should now be fixed. Could you try the new version?
Thanks, it's working well now!
Thanks for your great software—I've been eager to try it out.
I've encountered an error when running
gofilter.py
. I'd like to ask for your advice for troubleshooting. I wonder if the error arises from the .bed file containing gene positions?Calling
gofilter.py
:Head of
gencode.v35.annotation.bed
:Error:
I encounter the same errors when using .bed files with gene names and Entrez IDs, e.g.,
When I use the .bed file in your
hg38_goldenpathData
directory from Dropbox, I encounter this error:Head of the .bed in the
hg38_goldenpathData
,hg38.refGene.bed
:I tried a .bed with gene names and without NAs, similar to your mm10
mm10_gene_pos.bed
; head of .bed without NAs:The call:
The error: