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ayueme / easyTCGA

Make TCGA download and prepare easy!
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about getsnvmaf error #6

Open CCCBBG opened 2 months ago

CCCBBG commented 2 months ago

你好，请问一下，getsnvmaf的时候出现 getsnvmaf('TCGA-PRAD') => Querying begins. Make sure your network has access to GDC TCGA!

o GDCquery: Searching in GDC database

Genome of reference: hg38

oo Accessing GDC. This might take a while...

ooo Project: TCGA-PRAD

oo Filtering results

ooo By access ooo By data.type

oo Checking data

ooo Checking if there are duplicated cases ooo Checking if there are results for the query

o Preparing output

=> Downloading begins. Make sure your network has access to GDC TCGA!

Downloading data for project TCGA-PRAD GDCdownload will download 501 files. A total of 9.222102 MB Downloading as: Mon_Jul__8_10_43_12_2024.tar.gz Downloading: 9.3 MB => Downloading ends. Preparing begins. Error in dplyr::bind_rows():
! Can't combine ..10$Tumor_Seq_Allele2 and ..11$Tumor_Seq_Allele2 . Run rlang::last_trace() to see where the error occurred.

rlang::last_trace() <error/vctrs_error_ptype2> Error in dplyr::bind_rows(): ! Can't combine ..10$Tumor_Seq_Allele2 and ..11$Tumor_Seq_Allele2 .

Backtrace: ▆

  1. └─easyTCGA::getsnvmaf("TCGA-PRAD")
  2. └─TCGAbiolinks::GDCprepare(...)
  3. └─TCGAbiolinks:::readSimpleNucleotideVariationMaf(files)
  4. └─purrr::map_dfr(...)
  5. └─dplyr::bind_rows(res, .id = .id) Run rlang::last_trace(drop = FALSE) to see 15 hidden frames. 是什么原因呢？怎么解决呢？