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ayushkarnawat / profit

Exploring evolutionary protein fitness landscapes
MIT License
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[PyMOL] Verbose mode #87

Open ayushkarnawat opened 4 years ago

ayushkarnawat commented 4 years ago

When mutating residues for their tertiary structure using PyMOL's Mutagenesis wizard, it outputs (see example below) the residue selected and which rotamer was picked for the side chain (R-group). This gets annoying as there is no way to disable (suppress) them. 

Selected!
 Mutagenesis: 1 rotamers loaded.
 Mutagenesis: 2 rotamers loaded.
 Rotamer 1/2, strain=21.70
Selected!
 Mutagenesis: 3 rotamers loaded.
 Mutagenesis: 10 rotamers loaded.
 Rotamer 7/10, strain=19.60
Selected!
 Mutagenesis: 10 rotamers loaded.
 Mutagenesis: 1 rotamers loaded.
 Rotamer 1/1, strain=53.26
Selected!
 Mutagenesis: 3 rotamers loaded.
 Mutagenesis: 4 rotamers loaded.
 Rotamer 2/4, strain=56.67
 Rotamer 2/4, strain=56.67
ayushkarnawat commented 4 years ago

Even using the PyMOL CLI options (in particular -Q), it does not seem to suppress the text output.

Looking more deeply into the Mutagenesis wizard, the text outputs are directly printed to standard output rather than being logged.