Open tian6067 opened 1 month ago
The input to DIISCO is cell type proportions over time. Your single cell dataset needs to have samples sequenced at multiple time points and you need to go through your preferred clustering/annotation pipeline. The gene expression is only used in generating the prior and in post processing to predict R-L interactions. We are currently updating the package so please check back in a few weeks!
Hi,
This toolkit is excellent! Forgive me, I'm a newbie.
I want to use it in my own single cell dataset (scanpy dataset). but which one in nootbokhttps://github.com/azizilab/DIISCO_public/tree/main/notebooks, i should start first, because i don't found the scanpy dataset as input to DIISCO. so is the gene experssion matrix (csv) as input?
please tell me, thank you very much.