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azmfaridee / mothur

This is GSoC2012 fork of 'Mothur'. We are trying to implement a number of 'Feature Selection' algorithms for microbial ecology data and incorporate them into mother's main codebase.
https://github.com/mothur/mothur
GNU General Public License v3.0
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Week 12 & 13: Continue Working in Mothur Code Integration #23

Closed azmfaridee closed 11 years ago

azmfaridee commented 12 years ago

Weekly Update Issues: #3, #14, #15, #16, #17, #19, #20 and #21

Continuing from last weeks task, we keep porting python code into C++. Major work would be a mock implementation of classify.shared command that can be called from mothur command line.

Other Issue Related to Mothur Integration: #4, #5, #6 and #7

kdiverson commented 12 years ago

@darthxaher what's the timeline for the mothur integration? From the milestones it looks like this is to be finished in 11 days; is that still accurate? We might want to focus on getting the algo running in c++. Sarah and I can help with some of the housekeeping stuff if you want to work on optimizing the algo in c++.