An algorithm to detect nascent RNA transcription in GRO-seq and ChIP-seq
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Unsure how to use the strand paramater. If I give no strand paramater when segmenting I get only the forward strand. If I used -s neg I get only the forward strand. If I used -s - then it says Unknown user option: -. #3
These issues have been resolved. From this point on, there will be no notion of strand, you simply provide an input bedgraph using the -i option to both train and segment FStitch modules. Please let me know of future errors! cheers, Joey
These issues have been resolved. From this point on, there will be no notion of strand, you simply provide an input bedgraph using the -i option to both train and segment FStitch modules. Please let me know of future errors! cheers, Joey