Update CLI defaults to be simpler

bacpop / PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

https://www.bacpop.org/poppunk

Apache License 2.0

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Closed johnlees closed 3 years ago

johnlees commented 3 years ago

After this I am happy with the CLI, so will close #73 for now

Implements comments on #112