Assign with update DB only saves ref distances

bacpop / PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

https://www.bacpop.org/poppunk

Apache License 2.0

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Closed johnlees closed 3 years ago

johnlees commented 3 years ago

e.g.

python ../poppunk_assign-runner.py --query some_queries.txt --db example_db --output example_query_update --update-db --graph-weights --overwrite

Only saves example_query_update.refs.dists.npy/.pkl