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PopPUNK
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
https://www.bacpop.org/poppunk
Apache License 2.0
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MST improvements
#145
Closed
johnlees
closed
3 years ago
johnlees
commented
3 years ago
Thoughts so far (to do after, or as part of #141):
[ ] Add cuGraph version (see also #87)
[ ] Draw the MST as a network rather than tree (cytoscape or graphtool)
[ ] Alternative way of sparsifying graph (threshold/max memory approach)
Thoughts so far (to do after, or as part of #141):