bacpop / PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
https://www.bacpop.org/poppunk
Apache License 2.0
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Move C++ network code from sketchlib into PopPUNK #147

Closed johnlees closed 3 years ago

johnlees commented 3 years ago

Threshold iterate and threshold boundary make more sense as an extension in this package. At the same time, it would be nice to parallelise the sort in 1D networks (with boost: https://www.boost.org/doc/libs/1_67_0/libs/sort/doc/html/sort/parallel/parallel_stable_sort/parallel_programming.html)

See https://github.com/johnlees/pp-sketchlib/issues/49