Closed andreaniml closed 2 years ago
It's fine in principle, but it will only work when there are at least some shared k-mers between the plasmids - if you use a closely-related set of elements, with a short k-mer size range, then it should work - let us know!
Hello!
I'm wondering if PopPUNK could be aplied to a group of plasmids sequences (some are complete, others are predicted by other software). I believe the program would work, but I don't know if I wouldn't be breaking some statistical assumptions it uses. Can I use popPUNK for clustering plasmids? Cheers!
Maria Luiza