Closed OrsonMM closed 2 years ago
@OrsonMM please use the issue template and tell us how you installed PopPUNK.
Versions
Command used and output returned
Describe the bug
Hi - got identical error and I fixed as follow: After cloning the git, running python3 poppunk-runner.py it does not work (no module named "poppunk_refine". You need to build/install first using setup.py. I have install all dependencies, including cython and pybind11. In my Ubuntu I needed to export the path: export pybind11_DIR=/usr/local/lib/python3.8/dist-packages/pybind11/share/cmake/pybind11/
Finally, run
python setup.py build sudo python setup.py install
Then python poppunk-runner.py or just type poppunk works fine!
Thanks @aspitaleri
This would work, or you can also install via conda. pip installation is temporarily unsupported.
I have: These error
$ python3 poppunk-runner.py
Traceback (most recent call last): File "poppunk-runner.py", line 7, in
from PopPUNK.main import main
File "/home/administrador/programas/PopPUNK/PopPUNK/main.py", line 16, in
import poppunk_refine
ModuleNotFoundError: No module named 'poppunk_refine'