bacpop / PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
https://www.bacpop.org/poppunk
Apache License 2.0
87 stars 17 forks source link

Problem installing latest version in conda - libglib #228

Closed hmedwards closed 1 year ago

hmedwards commented 1 year ago

Hi, I can't install the latest version of poppunk due, it seems, to an issue with libglib? I'm not sure how to fix this. Any help appreciated! Thanks.

`$ conda config --add channels defaults Warning: 'defaults' already in 'channels' list, moving to the top $ conda config --add channels bioconda Warning: 'bioconda' already in 'channels' list, moving to the top $ conda config --add channels conda-forge Warning: 'conda-forge' already in 'channels' list, moving to the top $ conda create -n pp_env poppunk==2.5.0 Collecting package metadata (repodata.json): done Solving environment: done

Package Plan

environment location: home/anaconda3/envs/pp_env

added / updated specs:

The following NEW packages will be INSTALLED:

_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge None _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu None aom conda-forge/linux-64::aom-3.4.0-h27087fc_1 None at-spi2-atk conda-forge/linux-64::at-spi2-atk-2.38.0-h0630a04_3 None at-spi2-core conda-forge/linux-64::at-spi2-core-2.40.3-h0630a04_0 None atk-1.0 conda-forge/linux-64::atk-1.0-2.36.0-h3371d22_4 None biopython conda-forge/linux-64::biopython-1.79-py310h5764c6d_2 None boost conda-forge/linux-64::boost-1.74.0-py310h7c3ba0c_5 None boost-cpp conda-forge/linux-64::boost-cpp-1.74.0-h75c5d50_8 None brotli conda-forge/linux-64::brotli-1.0.9-h166bdaf_7 None brotli-bin conda-forge/linux-64::brotli-bin-1.0.9-h166bdaf_7 None brotlipy conda-forge/linux-64::brotlipy-0.7.0-py310h5764c6d_1004 None bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4 None c-ares conda-forge/linux-64::c-ares-1.18.1-h7f98852_0 None ca-certificates conda-forge/linux-64::ca-certificates-2022.9.24-ha878542_0 None cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1 None cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1 None cairo conda-forge/linux-64::cairo-1.16.0-ha61ee94_1014 None cairomm conda-forge/linux-64::cairomm-1.14.4-ha770c72_0 None cairomm-1.0 conda-forge/linux-64::cairomm-1.0-1.14.4-h09cb3b9_0 None certifi conda-forge/noarch::certifi-2022.9.24-pyhd8ed1ab_0 None cffi conda-forge/linux-64::cffi-1.15.1-py310h255011f_0 None charset-normalizer conda-forge/noarch::charset-normalizer-2.1.1-pyhd8ed1ab_0 None colorama conda-forge/noarch::colorama-0.4.5-pyhd8ed1ab_0 None contourpy conda-forge/linux-64::contourpy-1.0.5-py310hbf28c38_0 None cryptography conda-forge/linux-64::cryptography-38.0.1-py310h597c629_0 None cycler conda-forge/noarch::cycler-0.11.0-pyhd8ed1ab_0 None dbus conda-forge/linux-64::dbus-1.13.6-h5008d03_3 None dendropy bioconda/noarch::dendropy-4.5.2-pyh3252c3a_0 None docopt conda-forge/noarch::docopt-0.6.2-py_1 None epoxy conda-forge/linux-64::epoxy-1.5.10-h166bdaf_1 None expat conda-forge/linux-64::expat-2.4.9-h27087fc_0 None ffmpeg conda-forge/linux-64::ffmpeg-5.1.1-gpl_hfe78399_101 None font-ttf-dejavu-s~ conda-forge/noarch::font-ttf-dejavu-sans-mono-2.37-hab24e00_0 None font-ttf-inconsol~ conda-forge/noarch::font-ttf-inconsolata-3.000-h77eed37_0 None font-ttf-source-c~ conda-forge/noarch::font-ttf-source-code-pro-2.038-h77eed37_0 None font-ttf-ubuntu conda-forge/noarch::font-ttf-ubuntu-0.83-hab24e00_0 None fontconfig conda-forge/linux-64::fontconfig-2.14.0-hc2a2eb6_1 None fonts-conda-ecosy~ conda-forge/noarch::fonts-conda-ecosystem-1-0 None fonts-conda-forge conda-forge/noarch::fonts-conda-forge-1-0 None fonttools conda-forge/linux-64::fonttools-4.37.4-py310h5764c6d_0 None freetype conda-forge/linux-64::freetype-2.12.1-hca18f0e_0 None fribidi conda-forge/linux-64::fribidi-1.0.10-h36c2ea0_0 None gdk-pixbuf conda-forge/linux-64::gdk-pixbuf-2.42.8-hff1cb4f_1 None gettext conda-forge/linux-64::gettext-0.19.8.1-h27087fc_1009 None glib-tools conda-forge/linux-64::glib-tools-2.74.0-h6239696_0 None gmp conda-forge/linux-64::gmp-6.2.1-h58526e2_0 None gnutls conda-forge/linux-64::gnutls-3.7.8-hf3e180e_0 None graph-tool conda-forge/linux-64::graph-tool-2.45-py310haee70ea_2 None graph-tool-base conda-forge/linux-64::graph-tool-base-2.45-py310hd8094d8_2 None graphite2 conda-forge/linux-64::graphite2-1.3.13-h58526e2_1001 None gtk3 conda-forge/linux-64::gtk3-3.24.34-h4d20fae_1 None h5py conda-forge/linux-64::h5py-3.7.0-nompi_py310h416281c_101 None harfbuzz conda-forge/linux-64::harfbuzz-5.2.0-hf9f4e7c_0 None hdbscan conda-forge/linux-64::hdbscan-0.8.28-py310h96516ba_1 None hdf5 conda-forge/linux-64::hdf5-1.12.2-nompi_h2386368_100 None hicolor-icon-theme conda-forge/linux-64::hicolor-icon-theme-0.17-ha770c72_2 None icu conda-forge/linux-64::icu-70.1-h27087fc_0 None idna conda-forge/noarch::idna-3.4-pyhd8ed1ab_0 None joblib conda-forge/noarch::joblib-1.2.0-pyhd8ed1ab_0 None jpeg conda-forge/linux-64::jpeg-9e-h166bdaf_2 None keyutils conda-forge/linux-64::keyutils-1.6.1-h166bdaf_0 None kiwisolver conda-forge/linux-64::kiwisolver-1.4.4-py310hbf28c38_0 None krb5 conda-forge/linux-64::krb5-1.19.3-h3790be6_0 None lame conda-forge/linux-64::lame-3.100-h166bdaf_1002 None lcms2 conda-forge/linux-64::lcms2-2.12-hddcbb42_0 None ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2 None lerc conda-forge/linux-64::lerc-4.0.0-h27087fc_0 None libblas conda-forge/linux-64::libblas-3.9.0-16_linux64_openblas None libbrotlicommon conda-forge/linux-64::libbrotlicommon-1.0.9-h166bdaf_7 None libbrotlidec conda-forge/linux-64::libbrotlidec-1.0.9-h166bdaf_7 None libbrotlienc conda-forge/linux-64::libbrotlienc-1.0.9-h166bdaf_7 None libcblas conda-forge/linux-64::libcblas-3.9.0-16_linux64_openblas None libcups conda-forge/linux-64::libcups-2.3.3-h3e49a29_2 None libcurl conda-forge/linux-64::libcurl-7.85.0-h7bff187_0 None libdeflate conda-forge/linux-64::libdeflate-1.14-h166bdaf_0 None libdrm conda-forge/linux-64::libdrm-2.4.113-h166bdaf_0 None libedit conda-forge/linux-64::libedit-3.1.20191231-he28a2e2_2 None libev conda-forge/linux-64::libev-4.33-h516909a_1 None libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5 None libgcc-ng conda-forge/linux-64::libgcc-ng-12.1.0-h8d9b700_16 None libgfortran-ng conda-forge/linux-64::libgfortran-ng-12.1.0-h69a702a_16 None libgfortran5 conda-forge/linux-64::libgfortran5-12.1.0-hdcd56e2_16 None libgirepository conda-forge/linux-64::libgirepository-1.74.0-ha2a38d2_0 None libglib conda-forge/linux-64::libglib-2.74.0-h7a41b64_0 None libgomp conda-forge/linux-64::libgomp-12.1.0-h8d9b700_16 None libiconv conda-forge/linux-64::libiconv-1.17-h166bdaf_0 None libidn2 conda-forge/linux-64::libidn2-2.3.3-h166bdaf_0 None liblapack conda-forge/linux-64::liblapack-3.9.0-16_linux64_openblas None libnghttp2 conda-forge/linux-64::libnghttp2-1.47.0-hdcd2b5c_1 None libnsl conda-forge/linux-64::libnsl-2.0.0-h7f98852_0 None libopenblas conda-forge/linux-64::libopenblas-0.3.21-pthreads_h78a6416_3 None libpciaccess conda-forge/linux-64::libpciaccess-0.16-h516909a_0 None libpng conda-forge/linux-64::libpng-1.6.38-h753d276_0 None librsvg conda-forge/linux-64::librsvg-2.54.4-h7abd40a_0 None libsqlite conda-forge/linux-64::libsqlite-3.39.4-h753d276_0 None libssh2 conda-forge/linux-64::libssh2-1.10.0-haa6b8db_3 None libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-12.1.0-ha89aaad_16 None libtasn1 conda-forge/linux-64::libtasn1-4.19.0-h166bdaf_0 None libtiff conda-forge/linux-64::libtiff-4.4.0-h55922b4_4 None libunistring conda-forge/linux-64::libunistring-0.9.10-h7f98852_0 None libuuid conda-forge/linux-64::libuuid-2.32.1-h7f98852_1000 None libva conda-forge/linux-64::libva-2.16.0-h166bdaf_0 None libvpx conda-forge/linux-64::libvpx-1.11.0-h9c3ff4c_3 None libwebp-base conda-forge/linux-64::libwebp-base-1.2.4-h166bdaf_0 None libxcb conda-forge/linux-64::libxcb-1.13-h7f98852_1004 None libxml2 conda-forge/linux-64::libxml2-2.10.2-h4c7fe37_1 None libzlib conda-forge/linux-64::libzlib-1.2.12-h166bdaf_4 None mandrake conda-forge/linux-64::mandrake-1.2.2-py310h7dbff7e_1 None matplotlib-base conda-forge/linux-64::matplotlib-base-3.6.0-py310h8d5ebf3_0 None munkres conda-forge/noarch::munkres-1.1.4-pyh9f0ad1d_0 None ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1 None nettle conda-forge/linux-64::nettle-3.8.1-hc379101_1 None networkx conda-forge/noarch::networkx-2.8.7-pyhd8ed1ab_0 None numpy conda-forge/linux-64::numpy-1.23.3-py310h53a5b5f_0 None openblas conda-forge/linux-64::openblas-0.3.21-pthreads_h320a7e8_3 None openh264 conda-forge/linux-64::openh264-2.3.0-h27087fc_0 None openjpeg conda-forge/linux-64::openjpeg-2.5.0-h7d73246_1 None openssl conda-forge/linux-64::openssl-1.1.1q-h166bdaf_0 None p11-kit conda-forge/linux-64::p11-kit-0.24.1-hc5aa10d_0 None packaging conda-forge/noarch::packaging-21.3-pyhd8ed1ab_0 None pandas conda-forge/linux-64::pandas-1.5.0-py310h769672d_0 None pango conda-forge/linux-64::pango-1.50.11-h382ae3d_0 None pcre2 conda-forge/linux-64::pcre2-10.37-hc3806b6_1 None pillow conda-forge/linux-64::pillow-9.2.0-py310hbd86126_2 None pip conda-forge/noarch::pip-22.2.2-pyhd8ed1ab_0 None pixman conda-forge/linux-64::pixman-0.40.0-h36c2ea0_0 None plotly conda-forge/noarch::plotly-5.10.0-pyhd8ed1ab_0 None poppunk bioconda/linux-64::poppunk-2.5.0-py310h2579afa_0 None pp-sketchlib conda-forge/linux-64::pp-sketchlib-2.0.0-py310h5a37817_2 None pthread-stubs conda-forge/linux-64::pthread-stubs-0.4-h36c2ea0_1001 None pycairo conda-forge/linux-64::pycairo-1.21.0-py310h96fc21a_1 None pycparser conda-forge/noarch::pycparser-2.21-pyhd8ed1ab_0 None pygobject conda-forge/linux-64::pygobject-3.42.2-py310h964465f_0 None pyopenssl conda-forge/noarch::pyopenssl-22.0.0-pyhd8ed1ab_1 None pyparsing conda-forge/noarch::pyparsing-3.0.9-pyhd8ed1ab_0 None pysocks conda-forge/noarch::pysocks-1.7.1-pyha2e5f31_6 None python conda-forge/linux-64::python-3.10.6-h582c2e5_0_cpython None python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0 None python_abi conda-forge/linux-64::python_abi-3.10-2_cp310 None pytz conda-forge/noarch::pytz-2022.4-pyhd8ed1ab_0 None rapidnj bioconda/linux-64::rapidnj-2.3.2-h9f5acd7_2 None readline conda-forge/linux-64::readline-8.1.2-h0f457ee_0 None requests conda-forge/noarch::requests-2.28.1-pyhd8ed1ab_1 None scikit-learn conda-forge/linux-64::scikit-learn-1.1.2-py310h0c3af53_0 None scipy conda-forge/linux-64::scipy-1.9.1-py310hdfbd76f_0 None setuptools conda-forge/noarch::setuptools-65.4.1-pyhd8ed1ab_0 None sigcpp-2.0 conda-forge/linux-64::sigcpp-2.0-2.10.8-h27087fc_0 None six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0 None sparsehash conda-forge/linux-64::sparsehash-2.0.4-h9c3ff4c_0 None svt-av1 conda-forge/linux-64::svt-av1-1.2.1-h27087fc_0 None tenacity conda-forge/noarch::tenacity-8.1.0-pyhd8ed1ab_0 None threadpoolctl conda-forge/noarch::threadpoolctl-3.1.0-pyh8a188c0_0 None tk conda-forge/linux-64::tk-8.6.12-h27826a3_0 None tqdm conda-forge/noarch::tqdm-4.64.1-pyhd8ed1ab_0 None treeswift bioconda/noarch::treeswift-1.1.28-pyh5e36f6f_0 None tzdata conda-forge/noarch::tzdata-2022d-h191b570_0 None unicodedata2 conda-forge/linux-64::unicodedata2-14.0.0-py310h5764c6d_1 None urllib3 conda-forge/noarch::urllib3-1.26.11-pyhd8ed1ab_0 None wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0 None x264 conda-forge/linux-64::x264-1!164.3095-h166bdaf_2 None x265 conda-forge/linux-64::x265-3.5-h924138e_3 None xorg-compositepro~ conda-forge/linux-64::xorg-compositeproto-0.4.2-h7f98852_1001 None xorg-damageproto conda-forge/linux-64::xorg-damageproto-1.2.1-h7f98852_1002 None xorg-fixesproto conda-forge/linux-64::xorg-fixesproto-5.0-h7f98852_1002 None xorg-inputproto conda-forge/linux-64::xorg-inputproto-2.3.2-h7f98852_1002 None xorg-kbproto conda-forge/linux-64::xorg-kbproto-1.0.7-h7f98852_1002 None xorg-libice conda-forge/linux-64::xorg-libice-1.0.10-h7f98852_0 None xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.3-hd9c2040_1000 None xorg-libx11 conda-forge/linux-64::xorg-libx11-1.6.12-h36c2ea0_0 None xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.9-h7f98852_0 None xorg-libxaw conda-forge/linux-64::xorg-libxaw-1.0.14-h7f98852_0 None xorg-libxcomposite conda-forge/linux-64::xorg-libxcomposite-0.4.5-h7f98852_0 None xorg-libxcursor conda-forge/linux-64::xorg-libxcursor-1.2.0-h516909a_0 None xorg-libxdamage conda-forge/linux-64::xorg-libxdamage-1.1.5-h7f98852_0 None xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.3-h7f98852_0 None xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.4-h516909a_0 None xorg-libxfixes conda-forge/linux-64::xorg-libxfixes-5.0.3-h516909a_1004 None xorg-libxi conda-forge/linux-64::xorg-libxi-1.7.10-h516909a_0 None xorg-libxinerama conda-forge/linux-64::xorg-libxinerama-1.1.4-h9c3ff4c_1001 None xorg-libxmu conda-forge/linux-64::xorg-libxmu-1.1.3-h516909a_0 None xorg-libxpm conda-forge/linux-64::xorg-libxpm-3.5.13-h516909a_0 None xorg-libxrandr conda-forge/linux-64::xorg-libxrandr-1.5.2-h516909a_1 None xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.10-h516909a_1002 None xorg-libxt conda-forge/linux-64::xorg-libxt-1.1.5-h516909a_1003 None xorg-libxtst conda-forge/linux-64::xorg-libxtst-1.2.3-h516909a_1002 None xorg-randrproto conda-forge/linux-64::xorg-randrproto-1.5.0-h7f98852_1001 None xorg-recordproto conda-forge/linux-64::xorg-recordproto-1.14.2-h7f98852_1002 None xorg-renderproto conda-forge/linux-64::xorg-renderproto-0.11.1-h7f98852_1002 None xorg-util-macros conda-forge/linux-64::xorg-util-macros-1.19.3-h7f98852_0 None xorg-xextproto conda-forge/linux-64::xorg-xextproto-7.3.0-h7f98852_1002 None xorg-xproto conda-forge/linux-64::xorg-xproto-7.0.31-h7f98852_1007 None xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0 None zlib conda-forge/linux-64::zlib-1.2.12-h166bdaf_4 None zstandard conda-forge/linux-64::zstandard-0.18.0-py310h5764c6d_0 None zstd conda-forge/linux-64::zstd-1.5.2-h6239696_4 None

Proceed ([y]/n)? y

Preparing transaction: done Verifying transaction: failed

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'libexec/gio-launch-desktop' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/as/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/bg/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/bn_IN/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/ca/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/ca@valencia/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/cs/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/da/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/de/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/en_GB/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/es/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/eu/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/fr/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/gl/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/gu/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/he/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/hi/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/hr/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/hu/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/id/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/it/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/ja/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/kn/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/ko/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/lt/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/lv/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/mr/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/or/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/pa/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/pl/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/pt/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/pt_BR/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/ro/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/ru/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

SafetyError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/sk/LC_MESSAGES/glib20.mo' has an incorrect size. reported size: 127561 bytes actual size: 8704 bytes

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/sl/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/sr/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/sv/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/ta/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/te/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/th/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/tr/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.

CondaVerificationError: The package for libglib located at /rds/general/user/he11/home/anaconda3/pkgs/libglib-2.74.0-h7a41b64_0 appears to be corrupted. The path 'share/locale/uk/LC_MESSAGES/glib20.mo' specified in the package manifest cannot be found.`

nickjcroucher commented 1 year ago

Hi @hmedwards - I just followed the same steps as you, also on the HPC, and it seems to work OK - might just be an issue downloading one of the packages, so worth re-trying!

johnlees commented 1 year ago

This is likely a conda error not a poppunk error, based on the above – you might also try redoing your conda env from scratch

hmedwards commented 1 year ago

Thanks for the info. I've tried multiple times and the same error so perhaps I need to reinstall conda.

johnlees commented 1 year ago

Assuming this is fixed, please reopen if still a poppunk problem